Package: goat 1.1
goat: Gene Set Analysis Using the Gene Set Ordinal Association Test
Perform gene set enrichment analyses using the Gene set Ordinal Association Test (GOAT) algorithm and visualize your results. Koopmans, F. (2024) <doi:10.1038/s42003-024-06454-5>.
Authors:
goat_1.1.tar.gz
goat_1.1.tar.gz(r-4.5-noble)goat_1.1.tar.gz(r-4.4-noble)
goat_1.1.tgz(r-4.4-emscripten)goat_1.1.tgz(r-4.3-emscripten)
goat.pdf |goat.html✨
goat/json (API)
NEWS
# Install 'goat' in R: |
install.packages('goat', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ftwkoopmans/goat/issues
- goat_nulldistributions - Precomputed parameters used by the GOAT algorithm
Last updated 30 days agofrom:7c34dbc887. Checks:2 OK. Indexed: no.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Feb 18 2025 |
R-4.5-linux-x86_64 | OK | Feb 18 2025 |
Exports:available_genesets_goatrepocluster_genesetsdarken_colordownload_genesets_goatrepodownload_goat_manuscript_datafilter_genesetsgg_color_huego_gene2gogo_obogoat_logogoat_print_versiongoat_versionhgnc_idmap_tablelighten_colorload_genesets_gmtfileload_genesets_go_bioconductorload_genesets_go_fromfileload_genesets_syngominlog10_fixzeropadjust_genesetspartition_genesplot_heatmapplot_lollipopplot_networkplot_volcanorankscorerankscore_fixed_orderreduce_genesetssave_genesetsscore_geneset_directionalityscore_geneset_oddsratiostring_trunc_rightsymbol_to_entreztaxonomy_identifierstest_genesetstest_genesets_fisherexacttest_genesets_goat_bootstraptest_genesets_goat_fitfunctiontest_genesets_goat_precomputedtest_genesets_gseatest_genesets_hypergeometrictreemap_datatreemap_plot
Dependencies:base64encbslibcachemcellrangerclicolorspacecommonmarkcpp11crayondata.tabledigestdplyrfansifarverfastmapfontawesomefsgenericsggforceggplot2ggraphggrepelgluegraphlayoutsgridBasegridExtragtablehmshtmltoolshttpuvigraphisobandjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimeMonoPolymunsellnlmepheatmappillarpkgconfigpolyclipprettyunitsprogresspromisespurrrquadprogR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenreadxlrematchrlangsassscalesshinysourcetoolsstringistringrsystemfontstibbletidygraphtidyrtidyselecttreemaptweenrutf8vctrsviridisviridisLitewithrwritexlxtable