Package: goat 1.1
goat: Gene Set Analysis Using the Gene Set Ordinal Association Test
Perform gene set enrichment analyses using the Gene set Ordinal Association Test (GOAT) algorithm and visualize your results. Koopmans, F. (2024) <doi:10.1038/s42003-024-06454-5>.
Authors:
goat_1.1.tar.gz
goat_1.1.tar.gz(r-4.5-noble)goat_1.1.tar.gz(r-4.4-noble)
goat_1.1.tgz(r-4.4-emscripten)goat_1.1.tgz(r-4.3-emscripten)
goat.pdf |goat.html✨
goat/json (API)
NEWS
# Install 'goat' in R: |
install.packages('goat', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ftwkoopmans/goat/issues
- goat_nulldistributions - Precomputed parameters used by the GOAT algorithm
Last updated 13 days agofrom:7c34dbc887. Checks:2 OK. Indexed: no.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Jan 19 2025 |
R-4.5-linux-x86_64 | OK | Jan 19 2025 |
Exports:available_genesets_goatrepocluster_genesetsdarken_colordownload_genesets_goatrepodownload_goat_manuscript_datafilter_genesetsgg_color_huego_gene2gogo_obogoat_logogoat_print_versiongoat_versionhgnc_idmap_tablelighten_colorload_genesets_gmtfileload_genesets_go_bioconductorload_genesets_go_fromfileload_genesets_syngominlog10_fixzeropadjust_genesetspartition_genesplot_heatmapplot_lollipopplot_networkplot_volcanorankscorerankscore_fixed_orderreduce_genesetssave_genesetsscore_geneset_directionalityscore_geneset_oddsratiostring_trunc_rightsymbol_to_entreztaxonomy_identifierstest_genesetstest_genesets_fisherexacttest_genesets_goat_bootstraptest_genesets_goat_fitfunctiontest_genesets_goat_precomputedtest_genesets_gseatest_genesets_hypergeometrictreemap_datatreemap_plot
Dependencies:base64encbslibcachemcellrangerclicolorspacecommonmarkcpp11crayondata.tabledigestdplyrfansifarverfastmapfontawesomefsgenericsggforceggplot2ggraphggrepelgluegraphlayoutsgridBasegridExtragtablehmshtmltoolshttpuvigraphisobandjquerylibjsonlitelabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimeMonoPolymunsellnlmepheatmappillarpkgconfigpolyclipprettyunitsprogresspromisespurrrquadprogR6rappdirsRColorBrewerRcppRcppArmadilloRcppEigenreadxlrematchrlangsassscalesshinysourcetoolsstringistringrsystemfontstibbletidygraphtidyrtidyselecttreemaptweenrutf8vctrsviridisviridisLitewithrwritexlxtable