Getting started | Mapping data | Subcortical atlases | Camera and background
This package is considered a duplicate. The official version of this package is found at:https://ggsegverse.r-universe.dev/ggseg3d
Package: ggseg3d 2.1.2
Athanasia Mo Mowinckel
ggseg3d: Interactive 3D Brain Atlas Visualization
Plot brain atlases as interactive 3D meshes using 'Three.js' via 'htmlwidgets', or render publication-quality static images through 'rgl' and 'rayshader'. A pipe-friendly API lets you map data onto brain regions, control camera angles, toggle region edges, overlay glass brains, and snapshot or ray-trace the result. Additional atlases are available through the 'ggsegverse' r-universe. Mowinckel & Vidal-Piñeiro (2020) <doi:10.1177/2515245920928009>.
Authors:
ggseg3d_2.1.2.tar.gz
ggseg3d_2.1.2.tar.gz(r-4.7-any)ggseg3d_2.1.2.tar.gz(r-4.6-any)
ggseg3d_2.1.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ggseg3d/json (API)
| # Install 'ggseg3d' in R: |
| install.packages('ggseg3d', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ggsegverse/ggseg3d/issues
Pkgdown/docs site:https://ggsegverse.github.io
Last updated from:c1367d3518. Checks:4 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 178 | ||
| source / vignettes | OK | 251 | ||
| linux-release-x86_64 | OK | 174 | ||
| wasm-release | OK | 212 |
Exports:add_glassbrainasegdkggseg3dggseg3dOutputggsegraypan_camerarenderGgseg3dresolve_brain_meshset_backgroundset_dimensionsset_edgesset_flat_shadingset_legendset_orthographicset_positioningsnapshot_braintraculaupdateGgseg3dBackgroundupdateGgseg3dCamera
Dependencies:AsioHeadersbase64encbslibcachemcallrchromoteclicpp11curldigestdplyrevaluatefarverfastmapfontawesomefsgenericsgeometriesggseg.formatsgluehighrhtmltoolshtmlwidgetsjquerylibjsonliteknitrlabelinglaterlifecyclemagrittrmemoisemimeotelpillarpkgconfigprocessxpromisespspurrrR6rappdirsRColorBrewerRcpprlangrmarkdownsassscalessfheadersstringistringrtibbletidyrtidyselecttinytexutf8vctrsviridisLitewebshot2websocketwithrxfunyamlzip
Introduction to ggseg3d
Last update: 2026-02-20
Started: 2026-02-20
Using ggseg3d in Shiny
Basic Shiny integration | Output sizing | Reactive data | Updating camera and background | Complete example | Performance tips
Last update: 2026-02-20
Started: 2026-02-20
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Add glass brain to ggseg3d plot | add_glassbrain |
| Plot 3D brain parcellations | ggseg3d |
| Shiny bindings for ggseg3d | ggseg3d-shiny ggseg3dOutput renderGgseg3d |
| Render brain atlas with rgl | ggsegray |
| Pan camera position of ggseg3d plot | pan_camera |
| Resolve brain surface mesh | resolve_brain_mesh |
| Set background color of ggseg3d plot | set_background |
| Set widget dimensions | set_dimensions |
| Set region boundary edges | set_edges |
| Enable flat shading for ggseg3d plot | set_flat_shading |
| Set legend visibility | set_legend |
| Enable orthographic camera for ggseg3d plot | set_orthographic |
| Set hemisphere positioning mode | set_positioning |
| Save ggseg3d widget as image | snapshot_brain |
| Update background in Shiny | updateGgseg3dBackground |
| Update camera in Shiny | updateGgseg3dCamera |
