Package: genular 1.0.1
Ivan Tomic
genular: 'Genular' Database API
Provides an interface to the 'Genular' database API (<https://genular.atomic-lab.org>), allowing efficient retrieval and integration of genomic, proteomic, and single-cell data. It supports operations like fetching gene annotations, cell expression profiles, and other information as defined in the 'Genular' database, enabling seamless incorporation of biological data into R workflows. With functions tailored for bioinformatics and machine learning, the package facilitates exploration of cellular heterogeneity, gene-disease relationships, and pathway analysis, streamlining multi-omics data analysis.
Authors:
genular_1.0.1.tar.gz
genular_1.0.1.tar.gz(r-4.5-noble)genular_1.0.1.tar.gz(r-4.4-noble)
genular_1.0.1.tgz(r-4.4-emscripten)genular_1.0.1.tgz(r-4.3-emscripten)
genular.pdf |genular.html✨
genular/json (API)
NEWS
| # Install 'genular' in R: |
| install.packages('genular', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/atomiclaboratory/genular-database/issues
Last updated 4 days agofrom:4d18d30bd8. Checks:OK: 2. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 21 2024 |
| R-4.5-linux | OK | Oct 21 2024 |
Exports:cells_searchcells_search_formatcells_suggestcells_to_gene_signatureconvert_gene_expression_to_pathway_featuresextract_datafetch_all_gene_search_resultsgene_searchpathway_to_cell_signaturepathways_suggestsummerize_by_category
Dependencies:askpassclicpp11curldplyrfansigenericsgluehttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigpurrrR6rlangstringistringrsystibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Search Cell Information Based on Query Conditions | cells_search |
| Format Cell Search Results for Query Based on Lineage | cells_search_format |
| Suggest Cell Matches Based on Query Values | cells_suggest |
| Cells to Gene Signature | cells_to_gene_signature |
| Convert Gene Expression Data to Pathway-Level Features | convert_gene_expression_to_pathway_features |
| Extract Data Based on Mappings | extract_data |
| Fetch All Pages of Gene Search Results | fetch_all_gene_search_results |
| Search for Gene Information Based on a Query | gene_search |
| Pathway to Cell Signature | pathway_to_cell_signature |
| Suggest Pathway Matches Based on Query Values | pathways_suggest |
| Summarize Data by Category | summerize_by_category |
