Package: genSEIR 0.1.1

Selcuk Korkmaz

genSEIR: Predict Epidemic Curves with Generalized SEIR Modeling

Performs generalized Susceptible-Exposed-Infected-Recovered (SEIR) modeling to predict epidemic curves. The method is described in Peng et al. (2020) <doi:10.1101/2020.02.16.20023465>.

Authors:Selcuk Korkmaz [aut, cre]

genSEIR_0.1.1.tar.gz
genSEIR_0.1.1.tar.gz(r-4.5-noble)genSEIR_0.1.1.tar.gz(r-4.4-noble)
genSEIR_0.1.1.tgz(r-4.4-emscripten)genSEIR_0.1.1.tgz(r-4.3-emscripten)
genSEIR.pdf |genSEIR.html✨
genSEIR/json (API)

# Install 'genSEIR' in R:
install.packages('genSEIR', repos = 'https://cloud.r-project.org')

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.70 score 184 downloads 6 exports 32 dependencies

Last updated 4 years agofrom:9110ed1d9e. Checks:3 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 16 2025
R-4.5-linuxOKMar 16 2025
R-4.4-linuxOKMar 16 2025

Exports:checkRatesfit_SEIQRDPgetDataCOVIDplot_SEIQRDPpredict_SEIQRDPSEIQRDP

Dependencies:clicolorspacedigestfansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvminpack.lmmunsellnlmenlsrpillarpkgconfigpracmaR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr

Citation

To cite package ‘genSEIR’ in publications use:

Korkmaz S (2021). genSEIR: Predict Epidemic Curves with Generalized SEIR Modeling. R package version 0.1.1, https://CRAN.R-project.org/package=genSEIR.

Corresponding BibTeX entry: 

  @Manual{,
    title = {genSEIR: Predict Epidemic Curves with Generalized SEIR
      Modeling},
    author = {Selcuk Korkmaz},
    year = {2021},
    note = {R package version 0.1.1},
    url = {https://CRAN.R-project.org/package=genSEIR},
  }

Readme and manuals

genSEIR: An R Package for Generalized SEIR Modeling

This package performs generalized Susceptible-Exposed-Infected-Recovered (SEIR) modeling to predict epidemic curves for COVID-19. The method is described in Peng et al. (2020) (https://www.medrxiv.org/content/10.1101/2020.02.16.20023465v1).

Installation

devtools::install_github('selcukorkmaz/genSEIR')

Tutorial

https://selcukorkmaz.github.io/genseirhelp/