Package: gemtc 1.1-1
Gert van Valkenhoef
gemtc: Network Meta-Analysis Using Bayesian Methods
Network meta-analyses (mixed treatment comparisons) in the Bayesian framework using JAGS. Includes methods to assess heterogeneity and inconsistency, and a number of standard visualizations. van Valkenhoef et al. (2012) <doi:10.1002/jrsm.1054>; van Valkenhoef et al. (2015) <doi:10.1002/jrsm.1167>.
Authors:
gemtc_1.1-1.tar.gz
gemtc_1.1-1.tar.gz(r-4.7-arm64)gemtc_1.1-1.tar.gz(r-4.7-x86_64)gemtc_1.1-1.tar.gz(r-4.6-arm64)gemtc_1.1-1.tar.gz(r-4.6-x86_64)
gemtc_1.1-1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
gemtc/json (API)
NEWS
| # Install 'gemtc' in R: |
| install.packages('gemtc', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/gertvv/gemtc/issues
- jags– Just Another Gibbs Sampler for Bayesian MCMC - binary JAGS is Just Another Gibbs Sampler. It is a program for analysis of Bayesian hierarchical models using Markov Chain Monte Carlo (MCMC) simulation not wholly unlike BUGS. JAGS was written with three aims in mind: * To have an engine for the BUGS language that runs on Unix * To be extensible, allowing users to write their own functions, distributions and samplers. * To be a plaftorm for experimentation with ideas in Bayesian modelling This package contains the 'jags' binary as well as the associated shared library modules loaded by the binary.
- c++– GNU Standard C++ Library v3
- atrialFibrillation - Prevention of stroke in atrial fibrillation patients
- blocker - Beta blockers to prevent mortality after myocardial infarction
- certolizumab - Certolizumab Pegol (CZP) for Rheumatoid Arthritis
- depression - Treatment response in major depression
- dietfat - Effects of low-fat diets on mortality
- hfPrevention - Statins versus placebo in primary and secondary prevention of heart failure
- parkinson - Mean off-time reduction in Parkinson's disease
- parkinson_diff - Mean off-time reduction in Parkinson's disease
- parkinson_shared - Mean off-time reduction in Parkinson's disease
- smoking - Psychological treatments to aid smoking cessation
- thrombolytic - Thrombolytic treatment after acute myocardial infarction
Last updated from:77f55c7e25. Checks:6 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 164 | ||
| linux-devel-x86_64 | OK | 164 | ||
| source / vignettes | OK | 213 | ||
| linux-release-arm64 | OK | 154 | ||
| linux-release-x86_64 | OK | 169 | ||
| wasm-release | OK | 130 |
Exports:blobbogramforestll.callmtc.anohemtc.data.studyrowmtc.deviancemtc.devplotmtc.hy.empirical.lormtc.hy.priormtc.levplotmtc.modelmtc.networkmtc.nodesplitmtc.nodesplit.comparisonsmtc.runplotCovariateEffectrank.probabilityrank.quantilesrelative.effectrelative.effect.tablesucra
Dependencies:bitbit64bootclicliprcodaCompQuadFormcpp11crayondigestdplyrfarverforcatsgenericsggplot2gluegtablehmsigraphisobandlabelinglatticelifecyclelme4magrittrMASSmathjaxrMatrixmetametabookmetadatmetaforminqanlmenloptrnumDerivpbapplypillarpkgconfigplyrprettyunitsprogresspurrrR6rbibutilsRColorBrewerRcppRcppEigenRdpackreadrreformulasRglpkrjagsrlangS7scalesslamstringistringrtibbletidyselecttruncnormtzdbutf8vctrsviridisLitevroomwithrxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| GeMTC: Network meta-analysis in R | gemtc-package gemtc mtc |
| Prevention of stroke in atrial fibrillation patients | atrialFibrillation |
| Plot a blobbogram (AKA forest plot) | blobbogram forest |
| Beta blockers to prevent mortality after myocardial infarction | blocker |
| Certolizumab Pegol (CZP) for Rheumatoid Arthritis | certolizumab |
| Treatment response in major depression | depression |
| Effects of low-fat diets on mortality | dietfat |
| Statins versus placebo in primary and secondary prevention of heart failure | hfPrevention |
| Call a likelihood/link-specific function | ll.call |
| Analysis of heterogeneity (ANOHE) | mtc.anohe plot.mtc.anohe plot.mtc.anohe.summary print.mtc.anohe print.mtc.anohe.summary summary.mtc.anohe |
| Convert one-study-per-row datasets | mtc.data.studyrow |
| Inspect residual deviance | mtc.deviance mtc.devplot mtc.levplot plot.mtc.deviance |
| Set priors for the heterogeneity parameter | mtc.hy.empirical.lor mtc.hy.prior |
| Generate network meta-analysis models | mtc.model plot.mtc.model print.mtc.model summary.mtc.model |
| Create an mtc.network | mtc.network plot.mtc.network |
| Node-splitting analysis of inconsistency | mtc.nodesplit mtc.nodesplit.comparisons plot.mtc.nodesplit plot.mtc.nodesplit.summary print.mtc.nodesplit print.mtc.nodesplit.summary summary.mtc.nodesplit |
| Running an 'mtc.model' using an MCMC sampler | as.mcmc.list.mtc.result forest.mtc.result mtc.result mtc.run plot.mtc.result print.mtc.result summary.mtc.result |
| Mean off-time reduction in Parkinson's disease | parkinson parkinson_diff parkinson_shared |
| Plot treatment effects versus covariate values | plotCovariateEffect |
| Calculating rank-probabilities | plot.mtc.rank.probability print.mtc.rank.probability rank.probability rank.quantiles sucra |
| Calculating relative effects | relative.effect |
| Table of relative effects | as.data.frame.mtc.relative.effect.table forest.mtc.relative.effect.table print.mtc.relative.effect.table relative.effect.table |
| Psychological treatments to aid smoking cessation | smoking |
| Thrombolytic treatment after acute myocardial infarction | thrombolytic |
