Package: fvfmR 1.0.0
Pieter Arnold
fvfmR: Chlorophyll Fluorescence (Fv/Fm) Analysis of Leaf Disc Images
Semi-automated analysis of chlorophyll fluorescence images of leaf discs taken with a 'Walz' 'IMAGING-PAM' fluorometer. Provides an R interface to the 'fvfmPy' 'Python' package, which detects leaf discs, assigns them to a grid of rows and columns, and computes the maximum quantum efficiency of photosystem II, Fv/Fm = (Fm - Fo) / Fm, for each disc. The interactive 'fvfmPy' window is launched from R and the results are returned to R as a data frame.
Authors:
fvfmR_1.0.0.tar.gz
fvfmR_1.0.0.zip(r-4.7-any)fvfmR_1.0.0.zip(r-4.6-any)
fvfmR_1.0.0.tar.gz(r-4.7-any)fvfmR_1.0.0.tar.gz(r-4.6-any)
fvfmR_1.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
fvfmR/json (API)
| # Install 'fvfmR' in R: |
| install.packages('fvfmR', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/garenj/fvfmr/issues
Last updated from:10b99635bd. Checks:6 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 107 | ||
| source / vignettes | OK | 143 | ||
| linux-release | OK | 109 | ||
| windows-devel | OK | 71 | ||
| windows-release | OK | 62 | ||
| wasm-release | OK | 108 |
Exports:fvfm_examplefvfm_setuprun_fvfm
Dependencies:herejsonlitelatticeMatrixpngrappdirsRcppRcppTOMLreticulaterlangrprojrootwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Path to the example images | fvfm_example |
| Set up the Python environment for the fvfmR package | fvfm_setup |
| Run the fvfmPy leaf disc analysis GUI | run_fvfm |