Introduction
Package: fspls2 0.1.0
Lachlan Coin
fspls2: A Package to Find Minimal Transcriptional Signatures
Identifies minimal biomarker signatures for predicting phenotypes from multiomic data. Integrates multiple omics layers, supports internal cross-validation. Supports missing values in predictors and outcomes. Enables model based imputation of uncertain values. Supports continuous, binary, multi-class and ordinal outcomes.
Authors:
fspls2_0.1.0.tar.gz
fspls2_0.1.0.zip(r-4.7-any)fspls2_0.1.0.zip(r-4.6-any)
fspls2_0.1.0.tar.gz(r-4.7-any)fspls2_0.1.0.tar.gz(r-4.6-any)
fspls2_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
fspls2/json (API)
| # Install 'fspls2' in R: |
| install.packages('fspls2', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:ab0e4e1e2f. Checks:6 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 145 | ||
| source / vignettes | OK | 227 | ||
| linux-release | OK | 169 | ||
| windows-devel | OK | 124 | ||
| windows-release | OK | 124 | ||
| wasm-release | OK | 113 |
Exports:analysisBasedataHfspls.selectgetFamilygetFoldsgetTransformplotEval
Dependencies:binombitbit64blobbootcachemclicodetoolsconfintrcpp11data.tableDBIdplyrfarverfastmapforeachgenericsggplot2ggrepelglmnetgluegtableisobanditeratorsjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmemoisepillarpkgconfigpROCpurrrR6RColorBrewerRcppRcppEigenrlangRSQLiteS7scalesshapestringistringrsurvivaltibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Analysis Base Class | analysisBase |
| Analysis Class | analysisEnv |
| Data holder class | dataH |
| main function for variable selection with unknown values | fspls.iterative |
| main function for variable selection | fspls.select |
| Infer the statistical families of the phenotypes | getFamily |
| extracts the full model variables from a cross validation run | getFolds |
| Get object for transforming the x variables | getTransform |
| Plot the results from evaluateAll | plotEval |