This package is considered a duplicate. The official version of this package is found at:https://wevertonbio.r-universe.dev/florabr

Package: florabr 1.3.0

Weverton Trindade

florabr: Explore Flora e Funga do Brasil Database

A collection of functions designed to retrieve, filter and spatialize data from the Flora e Funga do Brasil dataset. For more information about the dataset, please visit <https://floradobrasil.jbrj.gov.br/consulta/>.

Authors:Weverton Trindade [aut, cre]

florabr_1.3.0.tar.gz
florabr_1.3.0.tar.gz(r-4.5-noble)florabr_1.3.0.tar.gz(r-4.4-noble)
florabr_1.3.0.tgz(r-4.4-emscripten)florabr_1.3.0.tgz(r-4.3-emscripten)
florabr.pdf |florabr.html✨
florabr/json (API)
NEWS

# Install 'florabr' in R:

install.packages('florabr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/wevertonbio/florabr/issues

Pkgdown site:https://wevertonbio.github.io

Datasets:

bf_data - Flora e Funga do Brasil database - Version 393.401
biomes - SpatVector of the biomes of Brazil
brazil - SpatVector of the Brazil's national borders
occurrences - Records of plant species
states - SpatVector of the federal states of Brazil

3.86 score 12 scripts 247 downloads 15 exports 17 dependencies

Last updated 4 months agofrom:5a38bcdf84. Checks:2 OK. Indexed: no.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 08 2025
R-4.5-linux	OK	Jan 08 2025

Exports:check_names check_version filter_florabr get_attributes get_binomial get_florabr get_pam get_spat_occ get_synonym load_florabr match_names select_by_vernacular select_species solve_discrepancies subset_species

Dependencies:askpass codetools curl data.table doSNOW foreach httr iterators jsonlite mime openssl R6 Rcpp snow sys terra XML

Getting started with florabr

Rendered fromgetting_started.Rmdusingknitr::rmarkdownon Jan 08 2025.

Last update: 2024-09-10
Started: 2023-12-11

Selecting and filtering species

Rendered fromselecting_species.Rmdusingknitr::rmarkdownon Jan 08 2025.

Last update: 2024-09-10
Started: 2023-12-11

Using florabr to flag erroneous records

Rendered fromSpatialize_florabr.Rmdusingknitr::rmarkdownon Jan 08 2025.

Last update: 2024-05-17
Started: 2023-12-11

Obtaining a Presence-Absence Matrix

Rendered fromgetting_pam.Rmdusingknitr::rmarkdownon Jan 08 2025.

Last update: 2024-05-17
Started: 2024-03-14

Citation

Readme and manuals

Help Manual

Help page	Topics
Flora e Funga do Brasil database - Version 393.401	bf_data
SpatVector of the biomes of Brazil	biomes
SpatVector of the Brazil's national borders	brazil
Check species names	check_names match_names
Check if you have the latest version of Flora e Funga do Brasil data available	check_version
Identify records outside natural ranges according to Flora e Funga do Brasil	filter_florabr
Get available attributes to filter species	get_attributes
Extract the binomial name (Genus + specific epithet + infraspecific epithet (optional)) from a full Scientific Name	get_binomial
Download the latest version of Flora e Funga do Brasil database	get_florabr
Get a presence-absence matrix	get_pam
Get Spatial polygons (SpatVectors) of species based on its distribution (states and biomes) according to Flora e Funga do Brasil	get_spat_occ
Retrieve synonyms for species	get_synonym
Load Flora e Funga do Brasil database	load_florabr
Records of plant species	occurrences
Search for taxa using vernacular names	select_by_vernacular
Selection of species based on its characteristics and distribution	select_species
Resolve discrepancies between species and subspecies/varieties information	solve_discrepancies
SpatVector of the federal states of Brazil	states
Extract a subset of species from Flora e Funga do Brasil database	subset_species