Package: flippant 1.5.5
Johannes Graumann
flippant: Dithionite Scramblase Assay Analysis
The lipid scrambling activity of protein extracts and purified scramblases is often determined using a fluorescence-based assay involving many manual steps. flippant offers an integrated solution for the analysis and publication-grade graphical presentation of dithionite scramblase assays, as well as a platform for review, dissemination and extension of the strategies it employs. The package's name derives from a play on the fact that lipid scrambling is also sometimes referred to as 'flipping'. The package is originally published as Cotton, R.J., Ploier, B., Goren, M.A., Menon, A.K., and Graumann, J. (2017). "flippant–An R package for the automated analysis of fluorescence-based scramblase assays." BMC Bioinformatics 18, 146. <doi:10.1186/s12859-017-1542-y>.
Authors:
flippant_1.5.5.tar.gz
flippant_1.5.5.tar.gz(r-4.5-noble)flippant_1.5.5.tar.gz(r-4.4-noble)
flippant_1.5.5.tgz(r-4.4-emscripten)flippant_1.5.5.tgz(r-4.3-emscripten)
flippant.pdf |flippant.html✨
flippant/json (API)
| # Install 'flippant' in R: |
| install.packages('flippant', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 9 months agofrom:1621e76993. Checks:OK: 1 NOTE: 1. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 06 2024 |
| R-4.5-linux | NOTE | Dec 06 2024 |
Exports:extract_case_study_dataparse_fluorimeter_outputscramblase_assay_input_templatescramblase_assay_plotscramblase_assay_statsscramblase_assay_traces
Dependencies:clicolorspacedata.tablefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvminpack.lmmunsellnlmepillarpkgconfigplyrpracmaR6RColorBrewerRcpprlangscalesstringitibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Extract the case study dataset | extract_case_study_data |
| flippant | flippant |
| parse_felix_32_output | parse_felix_32_output |
| parse_felix_gx_output | parse_felix_gx_output |
| parse_fluorimeter_output | parse_fluorimeter_output |
| parse_FluorS_Essence_3.8_output | parse_FluorS_Essence_3.8_output |
| parse_manual_output | parse_manual_output |
| scramblase_assay_plot | scramblase_assay_calculations scramblase_assay_input_template scramblase_assay_plot scramblase_assay_stats scramblase_assay_traces |