Package: flexmsm 0.1.2

Alessia Eletti

flexmsm: A General Framework for Flexible Multi-State Survival Modelling

A general estimation framework for multi-state Markov processes with flexible specification of the transition intensities. The log-transition intensities can be specified through Generalised Additive Models which allow for virtually any type of covariate effect. Elementary specifications such as time-homogeneous processes and simple parametric forms are also supported. There are no limitations on the type of process one can assume, with both forward and backward transitions allowed and virtually any number of states.

Authors:Alessia Eletti [aut, cre], Giampiero Marra [aut], Rosalba Radice [aut]

flexmsm_0.1.2.tar.gz
flexmsm_0.1.2.tar.gz(r-4.5-noble)flexmsm_0.1.2.tar.gz(r-4.4-noble)
flexmsm_0.1.2.tgz(r-4.4-emscripten)flexmsm_0.1.2.tgz(r-4.3-emscripten)
flexmsm.pdf |flexmsm.html✨
flexmsm/json (API)

# Install 'flexmsm' in R:
install.packages('flexmsm', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • IDM_cav - Cardiac allograft vasculopathy (CAV) data

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 7 scripts 221 downloads 16 exports 59 dependencies

Last updated 4 months agofrom:aecb075fc3. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 18 2024
R-4.5-linuxOKOct 18 2024

Exports:conv.checkfMmsmfmsmLikGradapproxHess.generalLikGradHess.CMLikGradHess.generallogLik.fmsmP.predplot.fmsmprint.fmsmQ.matr.setup.generalQ.predsimulateIDMstate.pairs.CTsummary.fMmsmsummary.fmsm

Dependencies:abindADGofTestclicolorspacecopulaDBIevdfansifarvergamlss.distggplot2GJRMgluegmpGPArotationgslgtableismevisobandlabelinglatticelifecyclemagicmagrittrMASSMatrixmatrixStatsmgcvminqamitoolsmnormtmunsellmvtnormnlmenumDerivpcaPPpillarpkgconfigpsplinepsychR6RColorBrewerRcppRcppArmadillorlangRmpfrscalesscamstabledistsurveysurvivaltibbletrustutf8vctrsVGAMVineCopulaviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
flexmsm: Flexible Multi-State Modellingflexmsm-package flexmsm
Convergence diagnostics on fitted model output.conv.check
Flexible transition intensity based models for two dependant multistate processesfMmsm
Flexible transition intensity based models for univariate multistate processesfmsm
Fitted fmsmObject objectfmsmObject
Cardiac allograft vasculopathy (CAV) dataIDM_cav
Likelihood, gradient and Hessian for univariate transition intensity based modelsLikGradapproxHess.general
Likelihood, gradient and Hessian for univariate transition intensity based models for the base dependence model.LikGradHess.CM
Likelihood, gradient and Hessian for univariate transition intensity based modelsLikGradHess.general
Extract the log likelihood for the fitted multistate modellogLik.fmsm
Predict and plot the transition probabilitiesP.pred
Function to plot the smooths included in the model specifications.plot.fmsm
Print a fmsm objectprint.fmsm
Flexible transition intensity based models for univariate multistate processesprint.summary.fMmsm
Flexible transition intensity based models for two dependant multistate processesprint.summary.fmsm
Internal functionQ.matr.setup.general
Predict and plot the transition intensitiesQ.pred
Function to predict and plot the estimated transition intensities (and confidence intervals).simulateIDM
Function to extract state pair counts and observed (right) times.state.pairs.CT
Summary for fitted model ouput.summary.fMmsm
Summary for fitted model ouput.summary.fmsm