Package: fitODBOD 1.5.4

Amalan Mahendran

fitODBOD: Modeling Over Dispersed Binomial Outcome Data Using BMD and ABD

Contains Probability Mass Functions, Cumulative Mass Functions, Negative Log Likelihood value, parameter estimation and modeling data using Binomial Mixture Distributions (BMD) (Manoj et al (2013) <doi:10.5539/ijsp.v2n2p24>) and Alternate Binomial Distributions (ABD) (Paul (1985) <doi:10.1080/03610928508828990>), also Journal article to use the package(<doi:10.21105/joss.01505>).

Authors:Amalan Mahendran [aut, cre], Pushpakanthie Wijekoon [aut, ctb]

fitODBOD_1.5.4.tar.gz
fitODBOD_1.5.4.tar.gz(r-4.5-noble)fitODBOD_1.5.4.tar.gz(r-4.4-noble)
fitODBOD_1.5.4.tgz(r-4.4-emscripten)fitODBOD_1.5.4.tgz(r-4.3-emscripten)
fitODBOD.pdf |fitODBOD.html✨
fitODBOD/json (API)

# Install 'fitODBOD' in R:
install.packages('fitODBOD', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/amalan-constat/fitodbod/issues

Datasets:

2.74 score 137 scripts 431 downloads 93 exports 13 dependencies

Last updated 6 days agofrom:0f28e7235a. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 25 2024
R-4.5-linuxOKNov 25 2024

Exports:BODextractdAddBindBETAdBetaBindBetaCorrBindCOMPBindCorrBindGAMMAdGammaBindGBeta1dGHGBBdGHGBetadGrassiaIIBindKUMdKumBindLMBindMcGBBdMultiBindTRIdTriBindUNIdUniBinEstMGFBetaBinEstMLEAddBinEstMLEBetaBinEstMLEBetaCorrBinEstMLECOMPBinEstMLECorrBinEstMLEGammaBinEstMLEGHGBBEstMLEGrassiaIIBinEstMLEKumBinEstMLELMBinEstMLEMcGBBEstMLEMultiBinEstMLETriBinfitAddBinfitBetaBinfitBetaCorrBinfitBinfitCOMPBinfitCorrBinfitGammaBinfitGHGBBfitGrassiaIIBinfitKumBinfitLMBinfitMcGBBfitMultiBinfitTriBinGenerateBODmazBETAmazGAMMAmazGBeta1mazGHGBetamazKUMmazTRImazUNINegLLAddBinNegLLBetaBinNegLLBetaCorrBinNegLLCOMPBinNegLLCorrBinNegLLGammaBinNegLLGHGBBNegLLGrassiaIIBinNegLLKumBinNegLLLMBinNegLLMcGBBNegLLMultiBinNegLLTriBinOverdispersionpAddBinpBETApBetaBinpBetaCorrBinpCOMPBinpCorrBinpGAMMApGammaBinpGBeta1pGHGBBpGHGBetapGrassiaIIBinpKUMpKumBinpLMBinpMcGBBpMultiBinpTRIpTriBinpUNIpUniBin

Dependencies:bbmlebdsmatrixcontfracdeSolveelliptichypergeolatticeMASSMatrixmvtnormnumDerivrbibutilsRdpack

Readme and manuals

Help Manual

Help pageTopics
Alcohol dataAlcohol_data
Binomial Data Extraction from Raw dataBODextract
Chromosome DataChromosome_data
Course DataCourse_data
Additive Binomial DistributiondAddBin
Beta DistributiondBETA
Beta-Binomial DistributiondBetaBin
Beta-Correlated Binomial DistributiondBetaCorrBin
COM Poisson Binomial DistributiondCOMPBin
Correlated Binomial DistributiondCorrBin
Gamma DistributiondGAMMA
Gamma Binomial DistributiondGammaBin
Generalized Beta Type-1 DistributiondGBeta1
Gaussian Hypergeometric Generalized Beta Binomial DistributiondGHGBB
Gaussian Hypergeometric Generalized Beta DistributiondGHGBeta
Grassia-II-Binomial DistributiondGrassiaIIBin
Kumaraswamy DistributiondKUM
Kumaraswamy Binomial DistributiondKumBin
Lovinson Multiplicative Binomial DistributiondLMBin
McDonald Generalized Beta Binomial DistributiondMcGBB
Multiplicative Binomial DistributiondMultiBin
Triangular Distribution Bounded Between [0,1]dTRI
Triangular Binomial DistributiondTriBin
Uniform Distribution Bounded Between [0,1]dUNI
Uniform Binomial DistributiondUniBin
Family EpidemicsEpidemic_Cold
Estimating the shape parameters a and b for Beta-Binomial DistributionEstMGFBetaBin
Estimating the probability of success and alpha for Additive Binomial DistributionEstMLEAddBin
Estimating the shape parameters a and b for Beta-Binomial DistributionEstMLEBetaBin
Estimating the covariance, alpha and beta parameter values for Beta-Correlated Binomial DistributionEstMLEBetaCorrBin
Estimating the probability of success and v parameter for COM Poisson Binomial DistributionEstMLECOMPBin
Estimating the probability of success and correlation for Correlated Binomial DistributionEstMLECorrBin
Estimating the shape parameters c and l for Gamma Binomial distributionEstMLEGammaBin
Estimating the shape parameters a,b and c for Gaussian Hypergeometric Generalized Beta Binomial DistributionEstMLEGHGBB
Estimating the shape parameters a and b for Grassia II Binomial distributionEstMLEGrassiaIIBin
Estimating the shape parameters a and b and iterations for Kumaraswamy Binomial DistributionEstMLEKumBin
Estimating the probability of success and theta for Lovinson Multiplicative Binomial DistributionEstMLELMBin
Estimating the shape parameters a,b and c for McDonald Generalized Beta Binomial distributionEstMLEMcGBB
Estimating the probability of success and theta for Multiplicative Binomial DistributionEstMLEMultiBin
Estimating the mode value for Triangular Binomial DistributionEstMLETriBin
Exam DataExam_data
Fitting the Additive Binomial Distribution when binomial random variable, frequency, probability of success and alpha are givenfitAddBin
Fitting the Beta-Binomial Distribution when binomial random variable, frequency and shape parameters a and b are givenfitBetaBin
Fitting the Beta-Correlated Binomial Distribution when binomial random variable, frequency, covariance, alpha and beta parameters are givenfitBetaCorrBin
Fitting the Binomial Distribution when binomial random variable, frequency and probability value are givenfitBin
Fitting the COM Poisson Binomial Distribution when binomial random variable, frequency, probability of success and v parameter are givenfitCOMPBin
Fitting the Correlated Binomial Distribution when binomial random variable, frequency, probability of success and covariance are givenfitCorrBin
Fitting the Gamma Binomial distribution when binomial random variable, frequency and shape parameters are givenfitGammaBin
Fitting the Gaussian Hypergeometric Generalized Beta Binomial Distribution when binomial random variable, frequency and shape parameters a,b and c are givenfitGHGBB
Fitting the Grassia II Binomial distribution when binomial random variable, frequency and shape parameters are givenfitGrassiaIIBin
Fitting the Kumaraswamy Binomial Distribution when binomial random variable, frequency and shape parameters a and b, iterations parameter it are givenfitKumBin
Fitting the Lovinson Multiplicative Binomial Distribution when binomial random variable, frequency, probability of success and theta parameter are givenfitLMBin
Fitting the McDonald Generalized Beta Binomial distribution when binomial random variable, frequency and shape parameters are givenfitMcGBB
Fitting the Multiplicative Binomial Distribution when binomial random variable, frequency, probability of success and theta parameter are givenfitMultiBin
Fitting the Triangular Binomial Distribution when binomial random variable, frequency and mode value are givenfitTriBin
Generate Overdispersed Binomial Outcome DataGenerateBOD
Male children dataMale_Children
Beta DistributionmazBETA
Gamma DistributionmazGAMMA
Generalized Beta Type-1 DistributionmazGBeta1
Gaussian Hypergeometric Generalized Beta DistributionmazGHGBeta
Kumaraswamy DistributionmazKUM
Triangular Distribution Bounded Between [0,1]mazTRI
Uniform Distribution Bounded Between [0,1]mazUNI
Negative Log Likelihood value of Additive Binomial distributionNegLLAddBin
Negative Log Likelihood value of Beta-Binomial DistributionNegLLBetaBin
Negative Log Likelihood value of Beta-Correlated Binomial distributionNegLLBetaCorrBin
Negative Log Likelihood value of COM Poisson Binomial distributionNegLLCOMPBin
Negative Log Likelihood value of Correlated Binomial distributionNegLLCorrBin
Negative Log Likelihood value of Gamma Binomial DistributionNegLLGammaBin
Negative Log Likelihood value of Gaussian Hypergeometric Generalized Beta Binomial DistributionNegLLGHGBB
Negative Log Likelihood value of Grassia II Binomial DistributionNegLLGrassiaIIBin
Negative Log Likelihood value of Kumaraswamy Binomial DistributionNegLLKumBin
Negative Log Likelihood value of Lovinson Multiplicative Binomial distributionNegLLLMBin
Negative Log Likelihood value of McDonald Generalized Beta Binomial DistributionNegLLMcGBB
Negative Log Likelihood value of Multiplicative Binomial distributionNegLLMultiBin
Negative Log Likelihood value of Triangular Binomial DistributionNegLLTriBin
OverdispersionOverdispersion
Additive Binomial DistributionpAddBin
Beta DistributionpBETA
Beta-Binomial DistributionpBetaBin
Beta-Correlated Binomial DistributionpBetaCorrBin
COM Poisson Binomial DistributionpCOMPBin
Correlated Binomial DistributionpCorrBin
Gamma DistributionpGAMMA
Gamma Binomial DistributionpGammaBin
Generalized Beta Type-1 DistributionpGBeta1
Gaussian Hypergeometric Generalized Beta Binomial DistributionpGHGBB
Gaussian Hypergeometric Generalized Beta DistributionpGHGBeta
Grassia-II-Binomial DistributionpGrassiaIIBin
Kumaraswamy DistributionpKUM
Kumaraswamy Binomial DistributionpKumBin
Plant Disease Incidence dataPlant_DiseaseData
Lovinson Multiplicative Binomial DistributionpLMBin
McDonald Generalized Beta Binomial DistributionpMcGBB
Multiplicative Binomial DistributionpMultiBin
Triangular Distribution Bounded Between [0,1]pTRI
Triangular Binomial DistributionpTriBin
Uniform Distribution Bounded Between [0,1]pUNI
Uniform Binomial DistributionpUniBin
Terror Data ARGTerror_data_ARG
Terror Data USATerror_data_USA