Package: finbif 0.9.9
William K. Morris
finbif: Interface for the 'Finnish Biodiversity Information Facility' API
A programmatic interface to the 'Finnish Biodiversity Information Facility' ('FinBIF') API (<https://api.laji.fi>). 'FinBIF' aggregates Finnish biodiversity data from multiple sources in a single open access portal for researchers, citizen scientists, industry and government. 'FinBIF' allows users of biodiversity information to find, access, combine and visualise data on Finnish plants, animals and microorganisms. The 'finbif' package makes the publicly available data in 'FinBIF' easily accessible to programmers. Biodiversity information is available on taxonomy and taxon occurrence. Occurrence data can be filtered by taxon, time, location and other variables. The data accessed are conveniently preformatted for subsequent analyses.
Authors:
finbif_0.9.9.tar.gz
finbif_0.9.9.tar.gz(r-4.5-noble)finbif_0.9.9.tar.gz(r-4.4-noble)
finbif_0.9.9.tgz(r-4.4-emscripten)finbif_0.9.9.tgz(r-4.3-emscripten)
finbif.pdf |finbif.html✨
finbif/json (API)
NEWS
| # Install 'finbif' in R: |
| install.packages('finbif', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/luomus/finbif/issues
apibiodiversitybiodiversity-informaticsbiodiversity-informationfinbiffinbif-accessoccurrencesr-programmingspeciesspecimenstaxontaxonomyweb-services
Last updated 17 days agofrom:5147b77ef2. Checks:OK: 2. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 06 2024 |
| R-4.5-linux | OK | Nov 06 2024 |
Exports:common_namefb_check_taxafb_clear_cachefb_collectionsfb_informal_groupsfb_last_modfb_metadatafb_occurrencefb_occurrence_loadfb_request_tokenfb_taxafb_update_cachefinbif_check_taxafinbif_clear_cachefinbif_collectionsfinbif_informal_groupsfinbif_last_modfinbif_metadatafinbif_occurrencefinbif_occurrence_loadfinbif_request_tokenfinbif_taxafinbif_update_cachefrom_schemascientific_nametaxon_idto_dwcto_native
Dependencies:askpasscpp11curldigestgenericshttrjsonlitelubridatelutzmimeopensslR6Rcppsystimechange
Introduction to the finbif package
Rendered fromfinbif.Rmdusingknitr::rmarkdownon Nov 06 2024.Last update: 2024-08-20
Started: 2019-11-19
Occurrence records from FinBIF
Rendered fromv02_occurrence_data.Rmdusingknitr::rmarkdownon Nov 06 2024.Last update: 2024-08-20
Started: 2020-04-23
Selecting and ordering variables
Rendered fromv03_selecting_variables.Rmdusingknitr::rmarkdownon Nov 06 2024.Last update: 2023-06-29
Started: 2020-04-23
Metadata
Rendered fromv04_metadata.Rmdusingknitr::rmarkdownon Nov 06 2024.Last update: 2024-08-20
Started: 2020-04-23
Filtering occurrence records
Rendered fromv05_filtering.Rmdusingknitr::rmarkdownon Nov 06 2024.Last update: 2024-03-16
Started: 2020-04-23
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| finbif: Interface for the 'Finnish Biodiversity Information Facility' API | finbif-package finbif |
| Caching FinBIF downloads | caching |
| Filtering FinBIF records | filters |
| Check FinBIF taxa | fb_check_taxa finbif_check_taxa |
| Clear cache | fb_clear_cache finbif_clear_cache |
| FinBIF collections | fb_collections finbif_collections |
| FinBIF informal groups | fb_informal_groups finbif_informal_groups |
| Get last modified date for FinBIF occurrence records | fb_last_mod finbif_last_mod |
| FinBIF metadata | fb_metadata finbif_metadata |
| Download FinBIF occurrence records | fb_occurrence finbif_occurrence |
| Load FinBIF occurrence records from a file | fb_occurrence_load finbif_occurrence_load |
| Get a FinBIF personal access token | fb_request_token finbif_request_token |
| Search the FinBIF taxa | common_name fb_taxa finbif_taxa scientific_name taxon_id |
| Update cache | fb_update_cache finbif_update_cache |
| Convert variable names | from_schema to_dwc to_native |
| FinBIF record variables | variables |
