Package: finalfit 1.0.8

Ewen Harrison

finalfit: Quickly Create Elegant Regression Results Tables and Plots when Modelling

Generate regression results tables and plots in final format for publication. Explore models and export directly to PDF and 'Word' using 'RMarkdown'.

Authors:Ewen Harrison [aut, cre], Tom Drake [aut], Riinu Pius [aut]

finalfit_1.0.8.tar.gz
finalfit_1.0.8.tar.gz(r-4.5-noble)finalfit_1.0.8.tar.gz(r-4.4-noble)
finalfit_1.0.8.tgz(r-4.4-emscripten)finalfit_1.0.8.tgz(r-4.3-emscripten)
finalfit.pdf |finalfit.html✨
finalfit/json (API)
NEWS

# Install 'finalfit' in R:

install.packages('finalfit', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ewenharrison/finalfit/issues

Datasets:

colon_s - Chemotherapy for Stage B/C colon cancer
wcgs - Western Collaborative Group Study

95 exports 3.62 score 80 dependencies 26 mentions 808 scripts 4.6k downloads

Last updated 2 months agofrom:fc3d6277a5. Checks:OK: 2. Indexed: no.

Target	Result	Date
Doc / Vignettes	OK	Aug 24 2024
R-4.5-linux	OK	Aug 24 2024

Exports:%<>%%>%%$%boot_compare boot_predict catTestfisher check_recode coefficient_plot condense_fit coxphmulti coxphuni crrmulti crruni dependent_label extract_fit extract_labels extract_variable_label ff_column_totals ff_expand ff_formula ff_glimpse ff_interaction ff_label ff_merge ff_metrics ff_mode ff_newdata ff_parse_formula ff_percent_only ff_permute ff_plot ff_relabel ff_relabel_df ff_remove_p ff_remove_ref ff_row_totals ff_stratify_helper finalfit finalfit_column_totals finalfit_expand finalfit_formula finalfit_glimpse finalfit_interaction finalfit_label finalfit_merge finalfit_mode finalfit_newdata finalfit_percent_only finalfit_permute finalfit_plot finalfit_relabel finalfit_relabel_df finalfit_remove_p finalfit_remove_ref finalfit_row_totals finalfit.coxph finalfit.glm finalfit.lm fit2df format_n_percent glmmixed glmmulti glmmulti_boot glmuni hr_plot is.survival labels_to_column labels_to_level lmmixed lmmulti lmuni metrics_hoslem missing_compare missing_df missing_glimpse missing_pairs missing_pattern missing_plot missing_predictorMatrix or_plot p_tidy plot_title remove_intercept remove_labels rm_duplicate_labels rm_duplicates rm_empty_block round_tidy summary_df summary_factorlist summary_factorlist_stratified surv_plot svyglmmulti svyglmuni variable_type

Dependencies:backports bdsmatrix bit bit64 boot broom broom.helpers cli clipr codetools colorspace cpp11 crayon dplyr fansi farver forcats foreach generics GGally ggplot2 ggstats glmnet glue gridExtra gtable haven hms isoband iterators jomo labeling labelled lattice lifecycle lme4 magrittr MASS Matrix mgcv mice minqa mitml munsell nlme nloptr nnet numDeriv ordinal pan patchwork pillar pkgconfig plyr prettyunits pROC progress purrr R6 RColorBrewer Rcpp RcppEigen readr rlang rpart scales shape stringi stringr survival tibble tidyr tidyselect tzdb ucminf utf8 vctrs viridisLite vroom withr

All plots examples

Ewen Harrison

Rendered fromall_plots_examples.Rmdusingknitr::rmarkdownon Aug 24 2024.

Last update: 2023-11-17
Started: 2023-01-14

All tables examples

Ewen Harrison

Rendered fromall_tables_examples.Rmdusingknitr::rmarkdownon Aug 24 2024.

Last update: 2024-07-25
Started: 2019-03-26

Bootstrap simulation for model prediction

Ewen Harrison

Rendered frombootstrap.Rmdusingknitr::rmarkdownon Aug 24 2024.

Last update: 2024-07-25
Started: 2018-09-21

Exporting tables and plots

Ewen Harrison

Rendered fromexport.Rmdusingknitr::rmarkdownon Aug 24 2024.

Last update: 2019-05-31
Started: 2018-09-21

Getting started

Ewen Harrison

Rendered fromfinalfit.Rmdusingknitr::rmarkdownon Aug 24 2024.

Last update: 2021-12-05
Started: 2018-09-21

Missing data

Ewen Harrison

Rendered frommissing.Rmdusingknitr::rmarkdownon Aug 24 2024.

Last update: 2023-11-17
Started: 2018-09-21

Preparing data for finalfit

Ewen Harrison

Rendered fromdata_prep.Rmdusingknitr::rmarkdownon Aug 24 2024.

Last update: 2019-02-15
Started: 2019-02-15

Time-to-event (Survival)

Ewen Harrison

Rendered fromsurvival.Rmdusingknitr::rmarkdownon Aug 24 2024.

Last update: 2020-02-20
Started: 2019-07-19

Citation

Readme and manuals

Help Manual

Help page	Topics
finalfit: Quickly create elegant final results tables and plots when modelling.	finalfit-package
Compare bootstrapped distributions	boot_compare
Bootstrap simulation for model prediction	boot_predict
Check accurate recoding of variables	check_recode
Produce a coefficient table and plot	coefficient_plot
Chemotherapy for Stage B/C colon cancer	colon_s
Cox proprotional hazards multivariable models: 'finalfit' model wrapper	coxphmulti
Cox proprotional hazards univariable models: 'finalfit' model wrapper	coxphuni
Competing risks multivariable regression: 'finalfit' model wrapper	crrmulti
Competing risks univariable regression: 'finalfit' model wrapper	crruni
Make a label for the dependent variable	dependent_label
Extract variable labels from dataframe	extract_variable_label
Add column totals to 'summary_factorlist()' output	ff_column_totals finalfit_column_totals
Summarise with mode and mean/median and expand given factors	ff_expand finalfit_expand
Generate formula as character string	ff_formula finalfit_formula
Descriptive statistics for dataframe	ff_glimpse finalfit_glimpse
Make an interaction variable and add to dataframe	ff_interaction finalfit_interaction
Label a variable	ff_label finalfit_label
Merge a 'summary_factorlist()' table with any number of model results tables.	ff_merge finalfit_merge
Generate common metrics for regression model results	ff_metrics ff_metrics.coxph ff_metrics.coxphlist ff_metrics.glm ff_metrics.glmerMod ff_metrics.glmlist ff_metrics.lm ff_metrics.lmerMod ff_metrics.lmlist
Return the most frequent level in a factor	ff_mode finalfit_mode
Generate newdata for simulations	ff_newdata finalfit_newdata
Parse a formula to finalfit grammar	ff_parse_formula
Include only percentages for factors in 'summary_factorlist' output	ff_percent_only finalfit_percent_only
Permuate explanatory variables to produce multiple output tables for common regression models	ff_permute finalfit_permute
Produce a table and plot	ff_plot finalfit_plot
Relabel variables in a data frame	ff_relabel finalfit_relabel
Relabel variables from data frame after tidyverse functions	ff_relabel_df finalfit_relabel_df
Remove p-value from output	ff_remove_p finalfit_remove_p
Remove regression reference level row from table	ff_remove_ref finalfit_remove_ref
Add row totals to 'summary_factorlist()' output	ff_row_totals finalfit_row_totals
Help making stratified summary_factorlist tables	ff_stratify_helper
Final output tables for common regression models	finalfit finalfit.coxph finalfit.glm finalfit.lm
Extract model fit results to dataframe (generic): 'finalfit' model extractors	fit2df fit2df.coxme fit2df.coxph fit2df.coxphlist fit2df.crr fit2df.crrlist fit2df.glm fit2df.glmboot fit2df.glmerMod fit2df.glmlist fit2df.lm fit2df.lmerMod fit2df.lmlist fit2df.mipo fit2df.stanfit fit2df.svyglmlist
Format n and percent as a character	format_n_percent
Mixed effects binomial logistic regression models: 'finalfit' model wrapper	glmmixed
Binomial logistic regression multivariable models: 'finalfit' model wrapper	glmmulti
Binomial logistic regression multivariable models with bootstrapped confidence intervals: 'finalfit' model wrapper	glmmulti_boot
Binomial logistic regression univariable models: 'finalfit' model wrapper	glmuni
Produce a hazard ratio table and plot	hr_plot
Labels to column names	labels_to_column
Labels to level	labels_to_level
Mixed effects linear regression models: 'finalfit' model wrapper	lmmixed
Linear regression multivariable models: 'finalfit' model wrapper	lmmulti
Linear regression univariable models: 'finalfit' model wrapper	lmuni
Hosmer-Lemeshow goodness of fit test	metrics_hoslem
Compare missing data	missing_compare
Summary of missing values	missing_glimpse
Missing values pairs plot	missing_pairs
Characterise missing data for 'finalfit' models	missing_pattern
Missing values occurrence plot	missing_plot
Create predictorMatrix for use with mice	missing_predictorMatrix
Produce an odds ratio table and plot	or_plot
Round p-values but keep trailing zeros	p_tidy
Remove duplicates and replace	rm_duplicates
Remove rows where all specified variables are missing	rm_empty_block
Round values but keep trailing zeros	round_tidy
Summarise with mode for factors and mean/median for numeric variables	summary_df
Summarise a set of factors (or continuous variables) by a dependent variable	summary_factorlist
Summarise a set of factors (or continuous variables) by a dependent variable	summary_factorlist_stratified
Plot survival curves with number-at-risk table	surv_plot
Multivariable survey-weighted generalised linear models	svyglmmulti
Univariable survey-weighted generalised linear models	svyglmuni
Western Collaborative Group Study	wcgs

Package: finalfit 1.0.8

finalfit: Quickly Create Elegant Regression Results Tables and Plots when Modelling

All plots examples

All tables examples

Bootstrap simulation for model prediction

Exporting tables and plots

Getting started

Missing data

Preparing data for finalfit

Time-to-event (Survival)

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)