Package: fibr 0.1.1
fibr: Prior-Fraction Diagnostics for Hierarchical Models
Computes the prior fraction, the per-group pooling or shrinkage factor, for hierarchical models, including directly from 'brms' fits. For each group-level coefficient the prior fraction is the share of the posterior precision contributed by the shrinkage prior relative to the likelihood; values near one indicate a coefficient that is prior-dominated (the centring/non-centring funnel regime), values near zero indicate a likelihood-dominated coefficient that is well identified from the data. These quantities are invisible to standard convergence diagnostics such as R-hat and effective sample size, and they indicate where a non-centred reparameterisation is likely to help. A companion advisor reports the same decomposition for changepoint random effects fitted with 'smoothbp'. The underlying geometry (the Fisher-metric connection on the base-fiber split, for which this connection is flat so the obstruction is statistical rather than geometric) is described in Bindoff (2026) <doi:10.5281/zenodo.20724550>; code reproducing the paper is in the package's source repository.
Authors:
fibr_0.1.1.tar.gz
fibr_0.1.1.tar.gz(r-4.7-any)fibr_0.1.1.tar.gz(r-4.6-any)
fibr_0.1.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
fibr/json (API)
| # Install 'fibr' in R: |
| install.packages('fibr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/abindoff/fibr/issues
Last updated from:83c8634cd6. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 239 | ||
| source / vignettes | OK | 359 | ||
| linux-release-x86_64 | OK | 265 | ||
| wasm-release | OK | 296 |
Exports:prior_fractionsmoothbp_advisor
Dependencies:abindbackportscheckmateclicpp11distributionalfarvergenericsggplot2gluegtableisobandlabelinglifecyclemagrittrmatrixStatsnumDerivpillarpkgconfigposteriorR6RColorBrewerrlangS7scalestensorAtibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Per-coordinate prior fraction (shrinkage / pooling factor) | prior_fraction prior_fraction.brmsfit prior_fraction.default |
| Parameterisation advisor for smoothbp changepoint random effects | smoothbp_advisor |
