This package is considered a duplicate. The official version of this package is found at:https://davidearn.r-universe.dev/fastbeta
Package: fastbeta 0.3.1
Mikael Jagan
fastbeta: Fast Approximation of Time-Varying Infectious Disease Transmission Rates
A fast method for approximating time-varying infectious disease transmission rates from disease incidence time series and other data, based on a discrete time approximation of an SEIR model, as analyzed in Jagan et al. (2020) <doi:10.1371/journal.pcbi.1008124>.
Authors:
fastbeta_0.3.1.tar.gz
fastbeta_0.3.1.tar.gz(r-4.5-noble)fastbeta_0.3.1.tar.gz(r-4.4-noble)
fastbeta_0.3.1.tgz(r-4.4-emscripten)fastbeta_0.3.1.tgz(r-4.3-emscripten)
fastbeta.pdf |fastbeta.html✨
fastbeta/json (API)
NEWS
| # Install 'fastbeta' in R: |
| install.packages('fastbeta', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/davidearn/fastbeta/issues
Datasets:
Last updated 3 days agofrom:995d6edf1f. Checks:OK: 2. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 25 2024 |
| R-4.5-linux-x86_64 | OK | Nov 25 2024 |
Exports:deconvolvefastbetafastbeta.bootstrapfastbeta.matrixptpiseirseir.eeseir.jacobianseir.R0sir
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| R Package 'fastbeta' | fastbeta-package |
| Richardson-Lucy Deconvolution | deconvolve |
| Estimate a Time-Varying Infectious Disease Transmission Rate | fastbeta |
| Parametric Bootstrapping | fastbeta.bootstrap |
| Calculate Coefficient Matrix for Iteration Step | fastbeta.matrix |
| Peak to Peak Iteration | ptpi |
| Simulate Infectious Disease Time Series | seir sir |
| Auxiliary Functions for the SEIR Model without Forcing | seir.auxiliary seir.ee seir.jacobian seir.R0 |
| Often Used Simulations | seir.library seir.ts01 seir.ts02 |
| Smallpox Mortality in London, England, 1661-1930 | smallpox |
