Package: facilityepimath 0.1.0

Damon Toth

facilityepimath: Analyze Mathematical Models of Healthcare Facility Transmission

Calculate useful quantities for a user-defined differential equation model of infectious disease transmission among individuals in a healthcare facility. Input rates of transition between states of individuals with and without the disease-causing organism, distributions of states at facility admission, relative infectivity of transmissible states, and the facility length of stay distribution. Calculate the model equilibrium and the basic facility reproduction number, as described in Toth et al. (2025) <doi:10.1101/2025.02.21.25322698>.

Authors:Damon Toth [aut, cre, cph], Centers for Disease Control and Prevention [fnd]

facilityepimath_0.1.0.tar.gz
facilityepimath_0.1.0.tar.gz(r-4.5-noble)facilityepimath_0.1.0.tar.gz(r-4.4-noble)
facilityepimath_0.1.0.tgz(r-4.4-emscripten)facilityepimath_0.1.0.tgz(r-4.3-emscripten)
facilityepimath.pdf |facilityepimath.html✨
facilityepimath/json (API)
NEWS

# Install 'facilityepimath' in R:
install.packages('facilityepimath', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/epiforesite/facilityepimath/issues

On CRAN:

Conda:

2.70 score 7 exports 1 dependencies

Last updated 8 days agofrom:af1f39ed0c. Checks:3 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKMar 07 2025
R-4.5-linuxOKMar 07 2025
R-4.4-linuxOKMar 07 2025

Exports:equilibfacilityeqfacilityR0meanlengthofstayMGFexponentialMGFgammaMGFmixedgamma

Dependencies:MASS

equilibrium-and-R0

Rendered fromequilibrium-and-R0.Rmdusingknitr::rmarkdownon Mar 07 2025.

Last update: 2025-03-07
Started: 2025-03-07