| Adding or removing a margin to a volume | add.margin |
| Adding shape to a 3D volume. | add.shape |
| Binary volume closing | bin.closing |
| Binary volume clustering | bin.clustering |
| Create a volume containing predefined shapes | bin.cuboid bin.cylinder bin.ellipsoid |
| Binary volume dilation | bin.dilation |
| Binary volume erosion | bin.erosion |
| Creation of a binary volume according to RoI | bin.from.roi |
| Creation of a binary volume according to the voxel values of a volume | bin.from.vol |
| Intersection of two binaries | bin.intersection |
| Inversion of a binary | bin.inversion |
| Binary volume opening | bin.opening |
| Subtraction of two binaries | bin.subtraction |
| Sum of two binaries | bin.sum |
| Cast of a character string | castlow.str |
| Cast of a character string | castup.str |
| DICOM raw data browser | dicom.browser |
| Conversion of DICOM raw data into a dataframe or a list of DICOM TAG information | dicom.parser |
| Anonymisation of a patient's DICOM files | dicom.patient.anonymiser |
| DICOM anonymizer | dicom.raw.data.anonymizer |
| DICOM file loading in raw data | dicom.raw.data.loader |
| Change TAG value in DICOM raw data | dicom.set.tag.value |
| DICOM TAG dictionary | dicom.tag.dictionary |
| DICOM TAG parser | dicom.tag.parser |
| Conversion of DICOM object into files that can be interpreted by the 'espadon' package | dicom.to.Rdcm.converter |
| DICOM content viewer | dicom.viewer |
| Display of a 2D histogram | display.2D.histo |
| Display the 3D contours of the RoI | display.3D.contour |
| 3D display of a mesh | display.3D.mesh |
| Display 3D sections of a patient | display.3D.sections |
| Display in 3D the selected planes of an 'espadon' class volume | display.3D.stack |
| Display of the volume density of a histogram | display.dV_dx |
| Display of a DVH | display.DVH |
| Display of a cumulative DVH in percent of total volume | display.DVH.pc |
| Display of the counts of a histogram | display.histo |
| Display of a plane of a volume | display.kplane |
| Display of the RoI legend | display.legend |
| Display patient objects links | display.obj.links |
| Display of the color scale of a color palette | display.palette |
| Display the transverse frontal or sagittal view in the patient reference system | display.plane |
| Error evaluation metrics for 2-volume comparisons | err.metrics.from.roi |
| ESPADON class | espadon.class |
| Export espadon objects in DICOM format | export |
| Creation of pyramid fan object with constant angle step. | fan.beam |
| Creation of pyramid fan object passing through pixels of a plane. | fan.planar |
| Creation of spherical fan object. | fan.sphere |
| Indices of voxels crossed by a fan | fan.to.voxel |
| Coordinates of the extreme points | get.extreme.pt |
| Conversion of the indices of a point into ijk vector | get.ijk.from.index |
| Indices relating to the coordinates of the points | get.ijk.from.xyz |
| Image value along an axis | get.line |
| List of connections between objects | get.obj.connection |
| Extracting a plane from a volume | get.plane |
| Transfer matrix between two frames of reference | get.rigid.M |
| List of inter-connections between RoI | get.roi.connection |
| Value of the volume at a selection of DICOM indices | get.value.from.ijk |
| Voxel value at a given depth of a mesh | get.value.from.mesh |
| Voxel values on a selection of points | get.value.from.xyz |
| Volume selected by binary volume | get.volume.from.bin |
| Volume of a region of interest (RoI) | get.volume.from.roi |
| Conversion of the indices of a point, into xyz coordinate vector in the patient's frame of reference | get.xyz.from.index |
| Comparison of the grids of two volume objects | grid.equal |
| 2D histograms of 2 volumes | histo.2D |
| Cumulative Dose Volume Histogram | histo.DVH |
| Histogram according to a binary | histo.from.bin |
| Histogram according to a RoI | histo.from.roi |
| Histogram of a volume | histo.vol |
| Load data of an 'espadon' class object | load.obj.data |
| Loading an 'espadon' object from DICOM files or folder | load.obj.from.dicom |
| Loading an 'espadon' object from *.Rdcm file | load.obj.from.Rdcm |
| Loading patient data from DICOM files | load.patient.from.dicom |
| Loading patient data from *.Rdcm files | load.patient.from.Rdcm |
| Loading a *.Rdcm file | load.Rdcm.raw.data |
| Loading of information about transfer matrices between frames of reference of patient Rdcm objects. | load.T.MAT |
| Creation of a mesh according to a binary volume | mesh.from.bin |
| Change of frame of reference of a mesh | mesh.in.new.ref |
| Repair of a mesh | mesh.repair |
| Adding spherical coordinates to a mesh | mesh.spheric.proj |
| Restrict volume to a binary selection | nesting.bin |
| Restriction of a volume to a rectangular parallelepiped | nesting.cube |
| Restrict volume to RoI | nesting.roi |
| Espadon object creating | obj.create |
| Creation of orientation | orientation.create |
| Rainbow palette | pal.rainbow |
| Conversion of Hounsfied Units to Realistic Volume Vizualization colors | pal.RVV |
| plot a 2D cut of a 3D object | plot plot.mesh plot.struct plot.volume |
| Inventory of 'espadon' objects from Rdcm files | Rdcm.inventory |
| Updating Rdcm files. | Rdcm.upgrade |
| Adding a frame of reference in T.MAT | ref.add |
| Adding volume's cutting planes frame of reference in T.MAT | ref.cutplane.add |
| Deletion of a frame of reference in T.MAT | ref.remove |
| Linking two existing frames of reference in T.MAT | ref.srctodest.add |
| Chi index 2D - 3D | rt.chi.index |
| Gamma index 2D - 3D | rt.gamma.index |
| Dosimetry, volume, conformity, homogeneity indices from binary selection | rt.indices.from.bin |
| Dosimetry, volume, conformity, homogeneity indices from RoI | rt.indices.from.roi |
| Save a T.MAT class object | save.T.MAT |
| Save a 'espadon' object in a pre-formatted *.Rdcm file | save.to.Rdcm |
| Regions of Interest (RoI) indices | select.names |
| Set the reference objects of a espadon object | set.reference.obj |
| Volume-based spatial similarity metrics calculated from binary modality 3D volumes. | sp.similarity.from.bin |
| Distance-based spatial similarity metrics calculated from the mesh. | sp.similarity.from.mesh |
| Clustering volumes by RoI | struct.clustering |
| Struct creating from contours list | struct.create |
| Creation of struct class object from a binary volume | struct.from.bin |
| Creation of struct class object from an espadon mesh | struct.from.mesh |
| Change of frame of reference of a "struct" class object. | struct.in.new.ref |
| Merging of structures into a new structure | struct.merge |
| Deployment of DICOM files from multiple patients | study.deployment |
| toy DICOM raw data | toy.dicom.raw |
| Load a toy patient for test | toy.load.patient |
| Vector product of two vectors | vector.product |
| Absolute error volume | vol.abserror |
| Creating a volume from another one | vol.copy |
| Volume creating | vol.create |
| Error volume | vol.error |
| Volume class object according to binary selection | vol.from.bin |
| Gradient of a volume | vol.gradient |
| Change of frame of reference of a volume | vol.in.new.ref |
| Median filter on a volume | vol.median |
| Oversampling a volume | vol.oversampling |
| Transform the grid of a volume class object into the grid of another | vol.regrid |
| repairing missing planes of volumes | vol.repair |
| Subsampling a volume | vol.subsampling |
| Sum of 2 volumes | vol.sum |
| Converting DICOM files to .xlsx files | xlsx.from.dcm |
| Converting .Rdcm files to .xlsx files | xlsx.from.Rdcm |
