Package: ern 2.0.0

David Champredon

ern: Effective Reproduction Number Estimation

Estimate the effective reproduction number from wastewater and clinical data sources.

Authors:David Champredon [aut, cre], Warsame Yusuf [aut], Irena Papst [aut]

ern_2.0.0.tar.gz
ern_2.0.0.tar.gz(r-4.5-noble)ern_2.0.0.tar.gz(r-4.4-noble)
ern_2.0.0.tgz(r-4.4-emscripten)ern_2.0.0.tgz(r-4.3-emscripten)
ern.pdf |ern.html
ern/json (API)

# Install 'ern' in R:
install.packages('ern', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • cl.data - Sample of aggregated clinical reports
  • ww.data - Sample of wastewater concentration

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.15 score 14 scripts 140 downloads 8 exports 59 dependencies

Last updated 8 months agofrom:a5ac4c4213. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 31 2024
R-4.5-linuxOKOct 31 2024

Exports:agg_to_dailydef_distestimate_R_clestimate_R_wwget_discrete_distplot_diagnostic_clplot_diagnostic_wwplot_dist

Dependencies:assertthataweekclicoarseDataToolscodacolorspacecpp11dplyrEpiEstimfansifarverfitdistrplusgenericsggplot2gluegridExtragtableincidenceisobandlabelinglatticelifecyclelubridatemagrittrMASSMatrixMatrixModelsmcmcMCMCpackmgcvmunsellnlmepatchworkpillarpkgconfigplyrpurrrquantregR6RColorBrewerRcppreshape2rjagsrlangrunjagsscalesSparseMstringistringrsurvivaltibbletidyrtidyselecttimechangeutf8vctrsviridisLitewithrzoo

Estimating the effective reproductive number using ern

Rendered fromest-rt.Rmdusingknitr::rmarkdownon Oct 31 2024.

Last update: 2024-04-23
Started: 2024-01-30