Package: emBALVI 0.1.0
Prakash Kumar
emBALVI: EM Bayesian Adaptive LASSO Variational Inference Based GWAS
Performs Genome-Wide Association Study (GWAS) analysis using Expectation-Maximization Bayesian Adaptive LASSO with Variational Inference (emBALVI). Includes genotype preprocessing, genomic relationship matrix construction, GWAS analysis, Manhattan and QQ plotting.s.
Authors:
emBALVI_0.1.0.tar.gz
emBALVI_0.1.0.tar.gz(r-4.7-any)emBALVI_0.1.0.tar.gz(r-4.6-any)
emBALVI_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
emBALVI/json (API)
| # Install 'emBALVI' in R: |
| install.packages('emBALVI', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- phenotypes_potatoyield - Potato Yield Phenotype Dataset
- snp_NN_10_hmp - SNP Genotype Dataset
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:56aff80a3a. Checks:4 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 115 | ||
| source / vignettes | OK | 163 | ||
| linux-release-x86_64 | OK | 140 | ||
| wasm-release | OK | 106 |
Exports:buildGRMconvert_to_dosageemBALVIplot_manhattanplot_qq
Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecycleR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Build VanRaden Genomic Relationship Matrix | buildGRM |
| Convert HMP Genotype to Dosage | convert_to_dosage |
| EM-BALVI GWAS | emBALVI |
| Potato Yield Phenotype Dataset | phenotypes_potatoyield |
| Manhattan Plot for emBALVI | plot_manhattan |
| QQ Plot for emBALVI GWAS Results | plot_qq |
| SNP Genotype Dataset (HMP Format) | snp_NN_10_hmp |