Package: ecostate 0.2.0

James T. Thorson

ecostate: State-Space Mass-Balance Model for Marine Ecosystems

Fits a state-space mass-balance model for marine ecosystems, which implements dynamics derived from 'Ecopath with Ecosim' <https://ecopath.org/> while fitting to time-series of fishery catch, biomass indices, age-composition samples, and weight-at-age data. Package 'ecostate' fits biological parameters (e.g., equilibrium mass) and measurement parameters (e.g., catchability coefficients) jointly with residual variation in process errors, and can include Bayesian priors for parameters.

Authors:James T. Thorson [aut, cre]

ecostate_0.2.0.tar.gz
ecostate_0.2.0.tar.gz(r-4.5-noble)ecostate_0.2.0.tar.gz(r-4.4-noble)
ecostate_0.2.0.tgz(r-4.4-emscripten)ecostate_0.2.0.tgz(r-4.3-emscripten)
ecostate.pdf |ecostate.html
ecostate/json (API)
NEWS

# Install 'ecostate' in R:
install.packages('ecostate', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/james-thorson-noaa/ecostate/issues

Datasets:

2.70 score 4 scripts 13 exports 42 dependencies

Last updated 2 days agofrom:738a1d5566. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 25 2024
R-4.5-linuxOKNov 25 2024

Exports:abm3pc_sysadd_equilibriumcompute_nllcompute_tracerdBdtddirmultecostateecostate_controlode23plot_foodwebprint_ecoparsrk4sysstanza_settings

Dependencies:backportscheckmateclicodacolorspacecpp11fansifarverggnetworkggplot2ggrepelgluegtableigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnetworknlmepillarpkgconfigR6RColorBrewerRcppRcppEigenrlangRTMBscalessnastatnet.commontibbleTMButf8vctrsviridisLitewithr

Model of Intermediate Complexity

Rendered frommodel_of_intermediate_complexity.Rmdusingknitr::rmarkdownon Nov 25 2024.

Last update: 2024-11-25
Started: 2024-11-25