Package: doublIn 0.2.0
Vera Arntzen
doublIn: Estimate Incubation or Latency Time using Doubly Interval Censored Observations
Visualize contact tracing data using a 'shiny' app and estimate the incubation or latency time of an infectious disease respecting the following characteristics in the analysis; (i) doubly interval censoring with (partly) overlapping or distinct windows; (ii) an infection risk corresponding to exponential growth; (iii) right truncation allowing for individual truncation times; (iv) different choices concerning the family of the distribution. For our earlier work, we refer to Arntzen et al. (2023) <doi:10.1002/sim.9726>. A paper describing our approach in detail will follow.
Authors:
doublIn_0.2.0.tar.gz
doublIn_0.2.0.tar.gz(r-4.5-noble)doublIn_0.2.0.tar.gz(r-4.4-noble)
doublIn_0.2.0.tgz(r-4.4-emscripten)doublIn_0.2.0.tgz(r-4.3-emscripten)
doublIn.pdf |doublIn.html✨
doublIn/json (API)
| # Install 'doublIn' in R: |
| install.packages('doublIn', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 5 months agofrom:c82e8ee6f9. Checks:OK: 2. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 17 2024 |
| R-4.5-linux | OK | Nov 17 2024 |
Exports:Estimate_doublInPlot_doublInVisualize_contact_tracing_data
Dependencies:askpassassertthatbackportsbase64encbbmlebdsmatrixBHbitbit64blobbroombslibcachemcallrcellrangerclicliprcodacolorspacecommonmarkconflictedcpp11crayoncrosstalkcurldata.tableDBIdbplyrdeSolvedigestdplyrDTdtplyrepicontactsevaluatefansifarverfastGHQuadfastmapflexsurvfontawesomeforcatsfsgarglegenericsggplot2gluegoogledrivegooglesheets4gtablehavenhighrhmshtmltoolshtmlwidgetshttpuvhttridsigraphisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelubridatemagrittrMASSMatrixmemoisemgcvmimemodelrmstatemStatsmuhazmunsellmvtnormnlmenumDerivopensslpillarpkgconfigplotlyprettyunitsprocessxprogresspromisespspurrrquadprogR6raggrappdirsRColorBrewerRcppRcppArmadilloreadrreadxlrematchrematch2reprexrjagsrlangrmarkdownrstpm2rstudioapirvestsassscalesselectrshinyshinydashboardshinythemesshinyWidgetssourcetoolsstatmodstringistringrsurvivalsyssystemfontstextshapingthreejstibbletidyrtidyselecttidyversetimechangetinytextzdbutf8uuidvctrsviridisLitevisNetworkvroomwithrxfunxml2xtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Estimate the incubation or latency time of an infectious disease, i.e. a doubly interval censored time-to-event | Estimate_doublIn |
| Plot the incubation or latency time distribution | Plot_doublIn |
| Visualize contact tracing data | Visualize_contact_tracing_data |
