Package: doublIn 0.2.0

Vera Arntzen

doublIn: Estimate Incubation or Latency Time using Doubly Interval Censored Observations

Visualize contact tracing data using a 'shiny' app and estimate the incubation or latency time of an infectious disease respecting the following characteristics in the analysis; (i) doubly interval censoring with (partly) overlapping or distinct windows; (ii) an infection risk corresponding to exponential growth; (iii) right truncation allowing for individual truncation times; (iv) different choices concerning the family of the distribution. For our earlier work, we refer to Arntzen et al. (2023) <doi:10.1002/sim.9726>. A paper describing our approach in detail will follow.

Authors:Vera Arntzen [aut, cre]

doublIn_0.2.0.tar.gz
doublIn_0.2.0.tar.gz(r-4.5-noble)doublIn_0.2.0.tar.gz(r-4.4-noble)
doublIn_0.2.0.tgz(r-4.4-emscripten)doublIn_0.2.0.tgz(r-4.3-emscripten)
doublIn.pdf |doublIn.html
doublIn/json (API)

# Install 'doublIn' in R:
install.packages('doublIn', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.30 score 3 scripts 552 downloads 3 exports 145 dependencies

Last updated 6 months agofrom:c82e8ee6f9. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 17 2024
R-4.5-linuxOKNov 17 2024

Exports:Estimate_doublInPlot_doublInVisualize_contact_tracing_data

Dependencies:askpassassertthatbackportsbase64encbbmlebdsmatrixBHbitbit64blobbroombslibcachemcallrcellrangerclicliprcodacolorspacecommonmarkconflictedcpp11crayoncrosstalkcurldata.tableDBIdbplyrdeSolvedigestdplyrDTdtplyrepicontactsevaluatefansifarverfastGHQuadfastmapflexsurvfontawesomeforcatsfsgarglegenericsggplot2gluegoogledrivegooglesheets4gtablehavenhighrhmshtmltoolshtmlwidgetshttpuvhttridsigraphisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelubridatemagrittrMASSMatrixmemoisemgcvmimemodelrmstatemStatsmuhazmunsellmvtnormnlmenumDerivopensslpillarpkgconfigplotlyprettyunitsprocessxprogresspromisespspurrrquadprogR6raggrappdirsRColorBrewerRcppRcppArmadilloreadrreadxlrematchrematch2reprexrjagsrlangrmarkdownrstpm2rstudioapirvestsassscalesselectrshinyshinydashboardshinythemesshinyWidgetssourcetoolsstatmodstringistringrsurvivalsyssystemfontstextshapingthreejstibbletidyrtidyselecttidyversetimechangetinytextzdbutf8uuidvctrsviridisLitevisNetworkvroomwithrxfunxml2xtableyaml