Package: divDyn 0.8.3
divDyn: Diversity Dynamics using Fossil Sampling Data
Functions to describe sampling and diversity dynamics of fossil occurrence datasets (e.g. from the Paleobiology Database). The package includes methods to calculate range- and occurrence-based metrics of taxonomic richness, extinction and origination rates, along with traditional sampling measures. A powerful subsampling tool is also included that implements frequently used sampling standardization methods in a multiple bin-framework. The plotting of time series and the occurrence data can be simplified by the functions incorporated in the package, as well as other calculations, such as environmental affinities and extinction selectivity testing. Details can be found in: Kocsis, A.T.; Reddin, C.J.; Alroy, J. and Kiessling, W. (2019) <doi:10.1101/423780>.
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divDyn_0.8.3.tar.gz
divDyn_0.8.3.tar.gz(r-4.5-noble)divDyn_0.8.3.tar.gz(r-4.4-noble)
divDyn_0.8.3.tgz(r-4.4-emscripten)divDyn_0.8.3.tgz(r-4.3-emscripten)
divDyn.pdf |divDyn.html✨
divDyn/json (API)
NEWS
# Install 'divDyn' in R: |
install.packages('divDyn', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/divdyn/r-package/issues
- corals - Fossil occurrences of scleractinian (stony) corals from the Paleobiology Database
- keys - Keys to process stratigraphic, environmental and lithological information from the Paleobiology Database
- stages - 95 bin Phanerozoic time scale based on the stratigraphic stages of Gradstein et al. 2020.
- stages2018 - 95 bin Phanerozoic time scale based on the stratigraphic stages of Ogg et al. (2016) with updated dates in some intervals (2018).
- stratkeys - The FossilWorks-based lookup table for the stratigraphic assignments of collections in the Paleobiology Database
- tens - The 10 million year resolution timescale of the Paleobiology Database
Last updated 4 days agofrom:1ebaf8dce7. Checks:OK: 1 WARNING: 1. Indexed: no.
Target | Result | Date |
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Doc / Vignettes | OK | Nov 25 2024 |
R-4.5-linux-x86_64 | WARNING | Nov 25 2024 |
Exports:affinitybinstatcategorizecleanspcollapsedivDynfadladfillgeorangeindicesmatchtimemodeltabomitpartsrangesratesplitrepmatchseqduplicatedshadessingletonsslicestreaklogsubsamplesubtrialCRsubtrialOXWsubtrialSQSsumstatsurvivorstabinatetsbarstsplotwhichmaxstreak
Dependencies:Rcpp