Package: distory 1.4.5
Emmanuel Paradis
distory: Distance Between Phylogenetic Histories
Geodesic distance between phylogenetic trees and associated functions. The theoretical background of 'distory' is published in Billera et al. (2001) "Geometry of the space of phylogenetic trees." <doi:10.1006/aama.2001.0759>.
Authors:
distory_1.4.5.tar.gz
distory_1.4.5.tar.gz(r-4.5-noble)distory_1.4.5.tar.gz(r-4.4-noble)
distory_1.4.5.tgz(r-4.4-emscripten)distory_1.4.5.tgz(r-4.3-emscripten)
distory.pdf |distory.html✨
distory/json (API)
NEWS
| # Install 'distory' in R: |
| install.packages('distory', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:2ad1a12110. Checks:OK: 2. Indexed: no.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 07 2024 |
| R-4.5-linux-x86_64 | OK | Dec 07 2024 |
Exports:bethe.treebin.multiPhyloboot.samples.idxsconvert.table.to.idxdist.multiPhylodistinct.edgesedge.from.splitget.bipartitiongromov.hyperbolicitylookup.samplesmcmc.target.seqorthant.boundary.treepartition.leavesphylo.diffposition.leverage
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Distance Between Phylogenetic Histories | distory-package distory |
| Bethe Tree | bethe.tree |
| Bin Trees | bin.multiPhylo |
| Geodesic Distance Between Phylogenetic Trees | dist.multiPhylo |
| Gromov Hyperbolicity Constant | gromov.hyperbolicity |
| Find MCMC Target Sequence | boot.samples.idxs convert.table.to.idx lookup.samples mcmc.target.seq |
| Orthant Boundary Tree | orthant.boundary.tree |
| Differences Between Phylogenetic Trees | distinct.edges edge.from.split get.bipartition partition.leaves phylo.diff |
| Position Leverage | position.leverage |
