Package: dismo 1.3-16

Robert J. Hijmans

dismo: Species Distribution Modeling

Methods for species distribution modeling, that is, predicting the environmental similarity of any site to that of the locations of known occurrences of a species.

Authors:Robert J. Hijmans [cre, aut], Steven Phillips [aut], John Leathwick [aut], Jane Elith [aut]

dismo_1.3-16.tar.gz
dismo_1.3-16.tar.gz(r-4.5-noble)dismo_1.3-16.tar.gz(r-4.4-noble)
dismo_1.3-16.tgz(r-4.4-emscripten)dismo_1.3-16.tgz(r-4.3-emscripten)
dismo.pdf |dismo.html✨
dismo/json (API)

# Install 'dismo' in R:
install.packages('dismo', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/rspatial/dismo/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

cpp

9.33 score 12 stars 22 packages 2.6k scripts 10k downloads 275 mentions 48 exports 5 dependencies

Last updated 2 days agofrom:753d7570f0. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 25 2024
R-4.5-linux-x86_64OKNov 25 2024

Exports:bioclimbiovarscalc.deviancecircleHullcirclesconvHulldcEvaluatedomainecocropecolimevaluateevaluateROCRgbifgbm.fixedgbm.holdoutgbm.interactionsgbm.perspecgbm.plotgbm.plot.fitsgbm.simplifygbm.stepgeocodegeoDistgeoIDWgetCropgmapgridSamplekfoldmahalmaxentMercatormessnicheEquivalencynicheOverlapnullRandomplotpointspointValuespredictprepareDatapwdSamplerandomPointsrectHullresponsessbthresholdvoronoivoronoiHull

Dependencies:latticerasterRcppspterra

SDM

Rendered fromsdm.Rnwusingutils::Sweaveon Nov 25 2024.

Last update: 2020-11-17
Started: 2013-07-11

Readme and manuals

Help Manual

Help pageTopics
Species distribution modelingdismo-package dismo
Solanum acaule dataacaule
Anguilla australis distribution dataAnguilla_grids Anguilla_test Anguilla_train
Bioclimbioclim bioclim,data.frame,missing-method bioclim,matrix,missing-method bioclim,Raster,data.frame-method bioclim,Raster,matrix-method bioclim,Raster,SpatialPoints-method bioclim,SpatialGridDataFrame,matrix-method bioclim,SpatialGridDataFrame,SpatialPoints-method Bioclim-class
bioclimatic variablesbiovars biovars,matrix,matrix,matrix-method biovars,Raster,Raster,Raster-method biovars,vector,vector,vector-method
Box plot of model evaluation databoxplot,ModelEvaluation-method
Calculate deviancecalc.deviance
Circle hull modelcircleHull circleHull,data.frame-method circleHull,matrix-method circleHull,SpatialPoints-method CircleHull-class
Circles rangecircles circles,data.frame-method circles,matrix-method circles,SpatialPoints-method CirclesRange-class
Convex hull modelConvexHull-class convHull convHull,data.frame-method convHull,matrix-method convHull,SpatialPoints-method
Evaluate by distance classdcEvaluate
densitydensity density,DistModel-method density,ModelEvaluation-method
Class "DistModel"DistModel-class
Domaindomain domain,data.frame,missing-method domain,matrix,missing-method domain,Raster,data.frame-method domain,Raster,matrix-method domain,Raster,SpatialPoints-method Domain-class
Ecocrop modelecocrop ECOCROP-class ECOCROPcrop-class ECOcrops getCrop plot,ECOCROP,missing-method plot,ECOCROPcrop,missing-method
Ecolim modelecolim ecolim,matrix,matrix-method EcoLim-class plot,EcoLim,ANY-method predict,EcoLim-method
Model evaluationevaluate
Model testing with the ROCR packageevaluateROCR
Plot model evaluation dataplot,ModelEvaluation,character-method
Data from GBIFgbif
gbm fixedgbm.fixed
gbm holdoutgbm.holdout
gbm interactionsgbm.interactions
gbm perspective plotgbm.perspec
gbm plotgbm.plot
gbm plot fitted valuesgbm.plot.fits
gbm simplifygbm.simplify
gbm stepgbm.step
Georeferencing with Googlegeocode
Geographic distance modelgeoDist geoDist,data.frame-method geoDist,matrix-method geoDist,SpatialPoints-method GeographicDistance-class
Get a Google mapgmap Mercator
Stratified regular sample on a gridgridSample
Inverse-distance weighted modelgeoIDW geoIDW,data.frame,data.frame-method geoIDW,matrix,matrix-method geoIDW,SpatialPoints,SpatialPoints-method InvDistWeightModel-class
k-fold partitioningkfold
Mahalanobis modelmahal mahal,data.frame,missing-method mahal,matrix,missing-method mahal,Raster,data.frame-method mahal,Raster,matrix-method mahal,Raster,SpatialPoints-method Mahalanobis-class
Maxentmaxent maxent,data.frame,vector-method maxent,missing,missing-method maxent,Raster,ANY-method maxent,SpatialGridDataFrame,ANY-method MaxEnt-class MaxEntReplicates-class
Multivariate environmental similarity surfaces (MESS)mess
Class "ModelEvaluation"ModelEvaluation-class
Niche equivalencynicheEquivalency
Niche overlapnicheOverlap
Pair plotspairs pairs,DistModel-method
Plot predictor valuesplot,Bioclim,missing-method plot,CircleHull,missing-method plot,CirclesRange,missing-method plot,ConvexHull,missing-method plot,DistModel,numeric-method plot,MaxEnt,missing-method plot,RectangularHull,missing-method plot,VoronoiHull,missing-method points,DistModel-method
point valuespointValues
Distribution model predictionspredict predict,Bioclim-method predict,CircleHull-method predict,CirclesRange-method predict,ConvexHull-method predict,Domain-method predict,GeographicDistance-method predict,InvDistWeightModel-method predict,Mahalanobis-method predict,MaxEnt-method predict,MaxEntReplicates-method predict,RectangularHull-method predict,VoronoiHull-method
Prepare data for model fittingprepareData
Pair-wise distance samplingpwdSample
Random null modelnullRandom
Random pointsrandomPoints
Rectangular hull modelRectangularHull-class rectHull rectHull,data.frame-method rectHull,matrix-method rectHull,SpatialPoints-method
response plotsresponse response,ANY-method response,DistModel-method response,MaxEntReplicates-method
Spatial sorting biasssb
Find a thresholdthreshold threshold,ModelEvaluation-method
Voronoi polygonsvoronoi voronoi,ANY-method
Voronoi hull modelvoronoiHull voronoiHull,data.frame,data.frame-method voronoiHull,matrix,matrix-method voronoiHull,SpatialPoints,SpatialPoints-method VoronoiHull-class