Package: denguedatahub 2.1.1

Thiyanga S. Talagala

denguedatahub: A Tidy Format Datasets of Dengue by Country

Provides a weekly, monthly, yearly summary of dengue cases by state/ province/ country.

Authors:Thiyanga S. Talagala [aut, cre]

denguedatahub_2.1.1.tar.gz
denguedatahub_2.1.1.tar.gz(r-4.5-noble)denguedatahub_2.1.1.tar.gz(r-4.4-noble)
denguedatahub_2.1.1.tgz(r-4.4-emscripten)denguedatahub_2.1.1.tgz(r-4.3-emscripten)
denguedatahub.pdf |denguedatahub.html✨
denguedatahub/json (API)

# Install 'denguedatahub' in R:
install.packages('denguedatahub', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/thiyangt/denguedatahub/issues

Uses libs:
  • openjdk– OpenJDK Java runtime, using Hotspot JIT
Datasets:

openjdk

2.23 score 34 scripts 272 downloads 7 exports 46 dependencies

Last updated 3 months agofrom:3311585282. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKDec 22 2024
R-4.5-linuxOKDec 22 2024

Exports:convert_slwer_to_tidyconvert_srilanka_wer_to_tidydownload_pdfwer_srilankafilter_year_werget_addressesget_pdflinks_srilankamin_max

Dependencies:askpassbitbit64clicliprcpp11crayoncurldplyrfansigenericsglueherehmshttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigpngprettyunitsprogresspurrrR6readrrJavarlangrprojrootrvestselectrstringistringrsystabulapdftibbletidyrtidyselecttzdbutf8vctrsvroomwithrxml2

Readme and manuals

Help Manual

Help pageTopics
Dengue and severe dengue cases and deaths for subregions of the Americasamericas_annual_data
All dengue cases by week in US states and territories, 2010 - 2023cdc_casesby_week
All dengue cases by age group and sex in US states and territories, 2010 - 2023cdc_dengue_agesex
All dengue cases by jurisdiction of residence in US states and territories, 2010 - 2023cdc_dengue_casesbyjurisdiction
All dengue cases by county of residence in US states and territories, 2010 - 2023cdc_dengue_countyyear
Locally acquired dengue cases by year, 2010 - 2023cdc_local_dengue_cases
Travel associated dengue cases by year, 2010 - 2023cdc_travel_associated_dengue_cases
Annual number of dengue fever infections in the USAcdc_usa_dengue_infection
Dengue related data in Chinachina_annual_data
Read weekly epidemiological reports and convert dengue data into tidy formatconvert_slwer_to_tidy
Read weekly epidemiological reports and convert dengue data into tidy formatconvert_srilanka_wer_to_tidy
Download and save weekly epidemiological reports from Epidemiology Unit, Ministry of Health, Sri Lanka (url https://www.epid.gov.lk/weekly-epidemiological-report/weekly-epidemiological-report)download_pdfwer_srilanka
Filter links corresponds to a specific year using the function output get_addressfilter_year_wer
Extract links of all downloadable files on a webpageget_addresses
Get URLs of weekly epidemiological reports from Epidemiology Unit, Ministry of Health, Sri Lanka (url https://www.epid.gov.lk/weekly-epidemiological-report/weekly-epidemiological-report)get_pdflinks_srilanka
DENGUE/DHF situation in India since 2017india_annual_data
Imported dengue cases in Koreakorea_dengue
Level of Dengue risk around the worldlevel_of_risk
Apply min-max transformationmin_max
Daily number of dengue fever infections in Philippinesphilippines_daily_data
Weekly number of dengue fever infections in Sri Lankasingapore_weekly_data
Annual reported dengue cases in Sri Lankasl_annual
Identification of dengue serotypes circulating in Sri Lankasl_dengue_serotype
Type and proportion of breeding habitats positive for Aedes aegypti mosquitoes, across provinces in Sri Lanka, 2017.sl_sites
Weekly number of dengue fever infections in Sri Lankasrilanka_weekly_data
Indigenous and imported dengue cases in Taiwan, 1987-2023.taiwan_dengue
Annual number of dengue fever infections around the worldworld_annual