Package: dendRoAnalyst 0.1.5

Sugam Aryal

dendRoAnalyst: A Tool for Processing and Analyzing Dendrometer Data

There are various functions for managing and cleaning data before the application of different approaches. This includes identifying and erasing sudden jumps in dendrometer data not related to environmental change, identifying the time gaps of recordings, and changing the temporal resolution of data to different frequencies. Furthermore, the package calculates daily statistics of dendrometer data, including the daily amplitude of tree growth. Various approaches can be applied to separate radial growth from daily cyclic shrinkage and expansion due to uptake and loss of stem water. In addition, it identifies periods of consecutive days with user-defined climatic conditions in daily meteorological data, then check what trees are doing during that period.

Authors:Sugam Aryal [aut, cre, dtc], Martin Häusser [aut], Jussi Grießinger [aut], Ze-Xin Fan [aut], Achim Bräuning [aut, dgs]

dendRoAnalyst_0.1.5.tar.gz
dendRoAnalyst_0.1.5.tar.gz(r-4.5-noble)dendRoAnalyst_0.1.5.tar.gz(r-4.4-noble)
dendRoAnalyst_0.1.5.tgz(r-4.4-emscripten)dendRoAnalyst_0.1.5.tgz(r-4.3-emscripten)
dendRoAnalyst.pdf |dendRoAnalyst.html✨
dendRoAnalyst/json (API)

# Install 'dendRoAnalyst' in R:
install.packages('dendRoAnalyst', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • gf_nepa17 - Dendrometer data of Kathmandu for 2017 with gap filled
  • ktm_rain17 - Daily rainfall data of Kathmandu for 2017.
  • nepa - Dendrometer data from Kathmandu
  • nepa17 - Dendrometer data of Kathmandu for 2017
  • nepa2 - Dendrometer data from Kathmandu version 2

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.60 score 2 stars 37 scripts 296 downloads 19 exports 122 dependencies

Last updated 9 months agofrom:9b114a020d. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 15 2024
R-4.5-linuxOKDec 15 2024

Exports:clim.twddaily.datadendro.resampledendro.truncatedm.detrenddm.fit.gompertzdm.na.interpolationi.jump.locatorjump.locatormean_detrended.dmmov.cor.dmnetwork.interpolationphase.scphase.zgplot_mov.corplot_SC_outputplot_ZG_outputread.dendrometertwd.maxima

Dependencies:askpassbackportsbase64encbitbit64blobbroombslibcachemcallrcellrangerclicliprcolorspaceconflictedcpp11crayoncurldata.tableDBIdbplyrdigestdplyrdtplyrevaluatefansifarverfastmapfontawesomeforcatsforecastfracdifffsgarglegenericsggplot2gluegoogledrivegooglesheets4gtablehavenhighrhmshtmltoolshttridsisobandjquerylibjsonliteknitrlabelinglatticelifecyclelmtestlubridatemagrittrMASSMatrixmemoisemgcvmimeminpack.lmmodelrmunsellnlmennetopensslpillarpkgconfigprettyunitsprocessxprogresspspsplinepurrrquadprogquantmodR6raggrappdirsRColorBrewerRcppRcppArmadilloreadrreadxlrematchrematch2reprexrlangrmarkdownrstudioapirvestsassscalesselectrstringistringrsyssystemfontstextshapingtibbletidyrtidyselecttidyversetimechangetimeDatetinytextseriesTTRtzdburcautf8uuidvctrsviridisLitevroomwithrxfunxml2xtsyamlzoo

Importing and formatting dataset for 'dendRoAnalyst' package

Rendered fromdendRoAnalyst_vignettes.Rmdusingknitr::rmarkdownon Dec 15 2024.

Last update: 2024-03-20
Started: 2020-07-03

News in latest version of 'dendRoAnalyst' package

Sugam Aryal

Rendered fromNEWS.Rmdusingknitr::rmarkdownon Dec 15 2024.

Last update: 2024-03-20
Started: 2024-03-20

Readme and manuals

Help Manual

Help pageTopics
Calculating relative growth change during no-rain periods.clim.twd
Calculation of daily statistics for dendrometer datadaily.data
Resampling temporal resolution of dendrometer and climate datadendro.resample
Truncation of the dendrometer datadendro.truncate
Detrend the dendrometer datadm.detrend
Fitting gompertz function on annual dendrometer datadm.fit.gompertz
Detection and interpolation of missing values in dendrometer data.dm.na.interpolation
Dendrometer data of Kathmandu for 2017 with gap filledgf_nepa17
Removing artefacts due to manual adjustments of dendrometers interactivelyi.jump.locator
Removing artefacts due to manual adjustments of dendrometers automatically for more than one dendrometersjump.locator
Daily rainfall data of Kathmandu for 2017.ktm_rain17
Calculate mean of detrended dendrometer data.mean_detrended.dm
Calculating running correlation between dendrometer data and daily climate.mov.cor.dm
Dendrometer data from Kathmandunepa
Dendrometer data of Kathmandu for 2017nepa17
Dendrometer data from Kathmandu version 2nepa2
Interpolation of NA values using the dendrometer networknetwork.interpolation
Application of the stem-cycle approach to calculate different phases, their duration and to plot them.phase.sc
Application of the zero-growth approach to calculate different phases, their duration and to plot them.phase.zg
Plotting moving correlation with climate.plot_mov.cor
Plotting output of stem cycle approach (i.e., output of phase.sc function).plot_SC_output
Plotting output of zero-growth approach (i.e., output of phase.zg function).plot_ZG_output
Reading dendrometer data.read.dendrometer
Locating the maxima of TWD periodstwd.maxima