Package: deeptime 2.1.0

William Gearty

deeptime: Plotting Tools for Anyone Working in Deep Time

Extends the functionality of other plotting packages (notably 'ggplot2') to help facilitate the plotting of data over long time intervals, including, but not limited to, geological, evolutionary, and ecological data. The primary goal of 'deeptime' is to enable users to add highly customizable timescales to their visualizations. Other functions are also included to assist with other areas of deep time visualization.

Authors:William Gearty [aut, cre]

deeptime_2.1.0.tar.gz
deeptime_2.1.0.tar.gz(r-4.5-noble)deeptime_2.1.0.tar.gz(r-4.4-noble)
deeptime_2.1.0.tgz(r-4.4-emscripten)deeptime_2.1.0.tgz(r-4.3-emscripten)
deeptime.pdf |deeptime.html✨
deeptime/json (API)
NEWS

# Install 'deeptime' in R:
install.packages('deeptime', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/willgearty/deeptime/issues

Datasets:
  • eons - Eon data from the International Commission on Stratigraphy
  • epochs - Epoch data from the International Commission on Stratigraphy
  • eras - Era data from the International Commission on Stratigraphy
  • periods - Period data from the International Commission on Stratigraphy
  • stages - Stage data from the International Commission on Stratigraphy

6.17 score 3 packages 156 scripts 811 downloads 1 mentions 39 exports 54 dependencies

Last updated 4 days agofrom:ded6d88658. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKOct 26 2024
R-4.5-linuxOKOct 26 2024

Exports:coord_geocoord_geo_polarcoord_geo_radialcoord_trans_flipcoord_trans_xyCoordGeoCoordGeoPolarCoordGeoRadialCoordTransFlipCoordTransXYdisparity_through_timefacet_grid_colorfacet_nested_colorfacet_nested_wrap_colorfacet_wrap_colorFacetGridColorFacetNestedColorFacetNestedWrapColorFacetWrapColorgeo_grobgeo_patterngeom_phylomorphogeom_points_rangeget_scale_datagetScaleDataggarrange2gggeo_scalegggeo_scale_oldgrid.pattern_geogtable_frame2guide_geoGuideGeopanel.disparityscale_color_geoscale_colour_geoscale_discrete_geoscale_fill_geoscale_fill_geopatternstat_points_range

Dependencies:base64encclicolorspacecommonmarkcpp11curldeeptimedatafansifarverggfittextggforceggh4xggplot2gluegridExtragridtextgrImport2gtableisobandjpeglabelinglatticelifecyclemagrittrmarkdownMASSMatrixmgcvmunsellnlmepillarpkgconfigpngpolyclipR6RColorBrewerRcppRcppEigenrlangscalesshadesstringistringrsystemfontstibbletidyselecttweenrutf8vctrsviridisLitewithrxfunXMLxml2

Adding geological timescales to phylogenies

Rendered fromphylogenies.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2024-08-20
Started: 2023-01-20

Adding geological timescales to plots

Rendered fromcoord_geo.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2024-08-20
Started: 2023-01-20

Combining and arranging plots

Rendered fromggarrange2.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2024-03-06
Started: 2023-01-20

Plotting geological/stratigraphical patterns

Rendered fromgeo.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2024-08-20
Started: 2024-08-20

Plotting temporal data

Rendered fromtime.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2024-03-09
Started: 2024-03-06

Plotting trait data

Rendered fromtraits.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2024-03-06
Started: 2023-01-20

Transforming coordinate systems

Rendered fromcoord.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2023-02-16
Started: 2023-01-20

Readme and manuals

Help Manual

Help pageTopics
Transformed coordinate system with geological timescaleCoordGeo coord_geo
Polar coordinate system with geological timescaleCoordGeoPolar coord_geo_polar
Enhanced polar coordinate system with geological timescaleCoordGeoRadial coord_geo_radial
Transformed and flipped Cartesian coordinate systemCoordTransFlip coord_trans_flip
Transformed XY Cartesian coordinate systemCoordTransXY coord_trans_xy
Disparity through time plot using latticedisparity_through_time
Eon data from the International Commission on Stratigraphy (v2023/06)eons
Epoch data from the International Commission on Stratigraphy (v2023/06)epochs
Era data from the International Commission on Stratigraphy (v2023/06)eras
Lay out panels in a grid with colored stripsFacetGridColor facet_grid_color
Layout panels in a grid with nested colored stripsFacetNestedColor facet_nested_color
Ribbon of panels with nested colored stripsFacetNestedWrapColor facet_nested_wrap_color
Wrap a 1d ribbon of panels into 2d with colored stripsFacetWrapColor facet_wrap_color
Get a FGDC geologic plotting patterngeo_grob geo_pattern
Plot a 2-D phylomorphospace in ggplot2geom_phylomorpho
Display points and their rangegeom_points_range stat_points_range
Get geological timescale dataget_scale_data
Combine and arrange multiple ggplot-like objectsggarrange2
Plot an individual FGDC pattern using gridgrid.pattern_geo
Decompose a ggplot gtablegtable_frame2
Geological timescale axis guideGuideGeo guide_geo
Combined wireframe and cloud panelpanel.disparity
Period data from the International Commission on Stratigraphy (v2023/06)periods
Geological Time Scale color scalesscale_color_geo scale_colour_geo scale_discrete_geo scale_fill_geo
Geologic pattern fill scalescale_fill_geopattern
Stage data from the International Commission on Stratigraphy (v2023/06)stages