Package: dartR.sexlinked 1.0.5
Diana Robledo-Ruiz
dartR.sexlinked: Analysing SNP Data to Identify Sex-Linked Markers
Identifies, filters and exports sex linked markers using 'SNP' (single nucleotide polymorphism) data. To install the other packages, we recommend to install the 'dartRverse' package, that supports the installation of all packages in the 'dartRverse'. If you want understand the applied rational to identify sexlinked markers and/or want to cite 'dartR.sexlinked', you find the information by typing citation('dartR.sexlinked') in the console.
Authors:
dartR.sexlinked_1.0.5.tar.gz
dartR.sexlinked_1.0.5.tar.gz(r-4.5-noble)dartR.sexlinked_1.0.5.tar.gz(r-4.4-noble)
dartR.sexlinked_1.0.5.tgz(r-4.4-emscripten)
dartR.sexlinked.pdf |dartR.sexlinked.html✨
dartR.sexlinked/json (API)
| # Install 'dartR.sexlinked' in R: |
| install.packages('dartR.sexlinked', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/green-striped-gecko/dartr/issues
Pkgdown site:https://green-striped-gecko.github.io
Last updated 6 months agofrom:90de5c165e. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Dec 22 2024 |
| R-4.5-linux | OK | Dec 22 2024 |
Exports:gl.drop.sexlinkedgl.infer.sexgl.keep.sexlinkedgl.report.sexlinked
Dependencies:ade4adegenetapearsenalbackportsbase64encbootbslibcachemcheckmatecliclustercodetoolscolorspacecommonmarkcpp11crayondartR.basedartR.datadata.tabledigestdoParalleldplyrevaluatefansifarverfastmapfontawesomeforeachforeignFormulafsgdsfmtgenericsggplot2gluegridExtragtablehaplo.statshighrHmischtmlTablehtmltoolshtmlwidgetshttpuvigraphisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelifecyclemagrittrMASSMatrixMatrixModelsmemoisemgcvmimemultcompmunsellmvtnormnlmennetpatchworkpegaspermutepillarpixmappkgconfigplyrpoisbinompolsplinepromisespurrrquantregR6rappdirsRColorBrewerRcppRcppArmadilloreshape2rlangrmarkdownrmsrpartrstudioapisandwichsassscalessegmentedseqinrshinySNPassocSNPRelatesourcetoolsspSparseMStAMPPstringistringrsurvivalTH.datatibbletidyrtidyselecttinytexutf8vctrsveganviridisviridisLitewithrxfunxtableyamlzoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Removes loci that are sex linked | gl.drop.sexlinked |
| Uses sex-linked loci to infer sex of individuals | gl.infer.sex |
| Keeps loci that are sex linked | gl.keep.sexlinked |
| Filters loci that are sex linked | gl.report.sexlinked |