Package: cyjShiny 1.0.42

Augustin Luna

cyjShiny: Cytoscape.js Shiny Widget (cyjShiny)

Wraps cytoscape.js as a shiny widget. cytoscape.js <https://js.cytoscape.org/> is a Javascript-based graph theory (network) library for visualization and analysis. This package supports the visualization of networks with custom visual styles and several available layouts. Demo Shiny applications are provided in the package code.

Authors:Omar Shah [ctb], Paul Shannon [aut], Augustin Luna [aut, cre]

cyjShiny_1.0.42.tar.gz
cyjShiny_1.0.42.tar.gz(r-4.5-noble)cyjShiny_1.0.42.tar.gz(r-4.4-noble)
cyjShiny_1.0.42.tgz(r-4.4-emscripten)cyjShiny_1.0.42.tgz(r-4.3-emscripten)
cyjShiny.pdf |cyjShiny.html✨
cyjShiny/json (API)

# Install 'cyjShiny' in R:

install.packages('cyjShiny', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

3.70 score 100 scripts 227 downloads 27 exports 41 dependencies

Last updated 2 years agofrom:61f71952b2. Checks:OK: 2. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Dec 07 2024
R-4.5-linux	OK	Dec 07 2024

Exports:addGraphFromDataFrame addGraphFromJsonFile clearSelection cyjShiny cyjShinyOutput dataFramesToJSON doLayout fit fitSelected getNodePositions getSelectedNodes graphNELtoJSON hideSelection invertSelection loadNetworkFromJSONFile loadStyleFile readAndStandardizeJSONNetworkFile readAndStandardizeJSONStyleFile removeGraph renderCyjShiny savePNGtoFile selectFirstNeighbors selectNodes setEdgeAttributes setNodeAttributes setNodePositions showAll

Dependencies:base64enc BiocGenerics bslib cachem cli commonmark crayon digest evaluate fastmap fontawesome fs generics glue graph highr htmltools htmlwidgets httpuv jquerylib jsonlite knitr later lifecycle magrittr memoise mime promises R6 rappdirs Rcpp rlang rmarkdown sass shiny sourcetools tinytex withr xfun xtable yaml

cyjShiny Introduction

Paul Shannon and Augustin Luna

Rendered frombasicIntro.Rmdusingknitr::rmarkdownon Dec 07 2024.

Last update: 2023-03-28
Started: 2022-01-20

Citation

Readme and manuals

Help Manual

Help page	Topics
Add graph from data.frame	addGraphFromDataFrame
Add graph from JSON file	addGraphFromJsonFile
Clear selection all node and edge selections removed	clearSelection
cyjShiny cyjShiny	cyjShiny
Standard shiny ui rendering construct	cyjShinyOutput
Create a cytoscape.js JSON graph from one or two data.frames.	dataFramesToJSON
Layout the current graph using the specified strategy.	doLayout
Set zoom and center of the graph display so that graph fills the display.	fit
Set zoom and center of the graph display so that the currently selected nodes fill the display	fitSelected
Get node positions	getNodePositions
Get Selected Nodes	getSelectedNodes
Convert R graphNEL object to cytoscape.js JSON.	graphNELtoJSON
Hide selection all selected nodes and their edges are hidden	hideSelection
Invert selection all selected nodes and their edges are hidden	invertSelection
Load a standard cytoscape.js JSON network file	loadNetworkFromJSONFile
Load a standard cytoscape.js style file	loadStyleFile
Read in a JSON network file, identify (or add) elements field return JSON	readAndStandardizeJSONNetworkFile
Read in a JSON file, extract the selector elements, return JSON	readAndStandardizeJSONStyleFile
Remove the current graph	removeGraph
More shiny plumbing - a cyjShiny wrapper for htmlwidget standard rendering operation	renderCyjShiny
Save a png rendering of the current network view to the specified filename	savePNGtoFile
Select first neighbors of the currently selected nodes	selectFirstNeighbors
Select Nodes	selectNodes
Assign the supplied edge attribute values to the graph structure contained in the browser.	setEdgeAttributes
Assign the supplied node attribute values to the graph structure contained in the browser.	setNodeAttributes
Set node positions from the supplied data.frame	setNodePositions
Show all all selected nodes and their edges are hidden	showAll