Package: currentSurvival 1.1

Eva Koritakova

currentSurvival: Estimation of CCI and CLFS Functions

The currentSurvival package contains functions for the estimation of the current cumulative incidence (CCI) and the current leukaemia-free survival (CLFS). The CCI is the probability that a patient is alive and in any disease remission (e.g. complete cytogenetic remission in chronic myeloid leukaemia) after initiating his or her therapy (e.g. tyrosine kinase therapy for chronic myeloid leukaemia). The CLFS is the probability that a patient is alive and in any disease remission after achieving the first disease remission.

Authors:Eva Koritakova, Tomas Pavlik, Jiri Mayer, Ladislav Dusek

currentSurvival_1.1.tar.gz
currentSurvival_1.1.tar.gz(r-4.5-noble)currentSurvival_1.1.tar.gz(r-4.4-noble)
currentSurvival_1.1.tgz(r-4.4-emscripten)currentSurvival_1.1.tgz(r-4.3-emscripten)
currentSurvival.pdf |currentSurvival.html✨
currentSurvival/json (API)

# Install 'currentSurvival' in R:
install.packages('currentSurvival', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • cml - Data of Patients With Chronic Myeloid Leukaemia

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

16 exports 0.00 score 4 dependencies 17 scripts 395 downloads

Last updated 2 years agofrom:076bfc7cc6. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 20 2024
R-4.5-linuxOKAug 20 2024

Exports:ccicci.nostratcci.pestcci.stratchisq.logchisq.loglogchisq.naiveclfsclfs.nostratclfs.pestclfs.stratcomci.pestlfs.pestpvals.2catpvals.catstretch

Dependencies:cmprsklatticeMatrixsurvival

Readme and manuals

Help Manual

Help pageTopics
Estimates Current Cumulative Incidence (CCI) and Common Cumulative Incidence (comCI) Functionscci
Estimates Current Cumulative Incidence (CCI) and Common Cumulative Incidence (comCI) Functions Without Stratificationcci.nostrat
Estimates Current Cumulative Incidence (CCI) Functioncci.pest
Estimates Stratified Current Cumulative Incidence (CCI) and Common Cumulative Incidence (comCI) Functionscci.strat
Compares Three or More Survival Estimates Using Log Testchisq.log
Compares Three or More Survival Estimates Using Complementary Log-log Testchisq.loglog
Compares Three or More Survival Estimates Using Naive Chi-square Testchisq.naive
Estimates Current Leukaemia-Free Survival (CLFS) and Common Leukaemia-Free Survival (LFS) Functionsclfs
Estimates Current Leukaemia-Free Survival (CLFS) and Common Leukaemia-Free Survival (LFS) Functions Without Stratificationclfs.nostrat
Estimates Current Leukaemia-Free Survival (CLFS) Functionclfs.pest
Estimates Stratified Current Leukaemia-Free Survival (CLFS) and Common Leukaemia-Free Survival (LFS) Functionsclfs.strat
Data of Patients With Chronic Myeloid Leukaemiacml
Estimates Common Cumulative Incidence (comCI) Functioncomci.pest
Estimates Common Leukaemia-Free Survival (LFS) Functionlfs.pest
Computes p-Values for The Comparison of Two Survival Curves at Fixed Points in Timepvals.2cat
Computes p-Values for The Comparison of Three or More Survival Curves at Fixed Points in Timepvals.cat
Assigns Survival Estimates to Each Day of the Follow-upstretch