Package: ctl 1.0.0-10
ctl: Correlated Trait Locus Mapping
Identification and network inference of genetic loci associated with correlation changes in quantitative traits (called correlated trait loci, CTLs). Arends et al. (2016) <doi:10.21105/joss.00087>.
Authors:
ctl_1.0.0-10.tar.gz
ctl_1.0.0-10.tar.gz(r-4.5-noble)ctl_1.0.0-10.tar.gz(r-4.4-noble)
ctl_1.0.0-10.tgz(r-4.4-emscripten)ctl_1.0.0-10.tgz(r-4.3-emscripten)
ctl.pdf |ctl.html✨
ctl/json (API)
# Install 'ctl' in R: |
install.packages('ctl', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- ath.churchill - Example metabolite expression data from Arabidopsis Thaliana on 9 metabolites.
- ath.gary - Example metabolite expression data from Arabidopsis Thaliana on 9 metabolites.
- ath.metab - Example metabolite expression data from Arabidopsis Thaliana on 24 metabolites.
- ath.metabolites - Example metabolite expression data from Arabidopsis Thaliana on 24 metabolites.
- ath.result - Output of QCLscan after 5000 permutations on the metabolite expression data from Arabidopsis Thaliana.
- yeast.brem - Example gene expression data from Saccharomyces cerevisiae on 301 RNA expressions.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 11 months agofrom:51422439e8. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 12 2024 |
R-4.5-linux-x86_64 | OK | Nov 12 2024 |
Exports:a_locaddChromosomeLinesbasic.qccheck.genotypescheck.markercheck.phenochiSQNchiSQtoPchr_lengthchr_total_lengthcircle.loccorrelated.phenotypecorrelationcreate.markerctl.circlectl.ctlmatrixctl.dcormatrixctl.lineplotctl.loadctl.namectl.namesctl.qtlmatrixctl.qtlprofilectl.versionCTLanalyseEffectsCTLanalyseRatiosCTLasLODctleffectsCTLmappingctlmarkerCTLnetworkCTLnetwork.addmarkerCTLpowerAnalysisCTLprofilesCTLregionsCTLscanCTLscan.crossCTLscantoScanoneCTLsignificantCTLtoLODvectordcordcor.createdeltaSDdetect.peaksdraw.elementdraw.splinegcLoopget.chr.edgesgetCorrelationsgetCorrelations.crossgetPermuteThresholdsgetRatiogetRVMhist.CTLobjectimage.CTLobjectinternal.imagelodscorestoscanonem_locmapinfotomarkerlocsmuniquenfromntoopenmpplot.CTLnetworkplot.CTLobjectplot.CTLpermuteplot.CTLscanplotCTLscan3plotExpressionplotTraitsprint.CTLobjectprint.CTLpermuteprint.CTLscanprintSignificantSlopeqtlimageQTLmappingredblueremove.diagscanSDscanSD.crossscanSlopesscanSlopes.crossstdSlopeBetastdSlopeErrorstdSlopeEstimatestdSlopeInterceptstdSlopeTesttest.chiSQNtest.correlationtest.getCorrelation.crosstest.power.testtop.correlatedwhiteblack