Package: crosstalkr 1.0.5
Davis Weaver
crosstalkr: Analysis of Graph-Structured Data with a Focus on Protein-Protein Interaction Networks
Provides a general toolkit for drug target identification. We include functionality to reduce large graphs to subgraphs and prioritize nodes. In addition to being optimized for use with generic graphs, we also provides support to analyze protein-protein interactions networks from online repositories. For more details on core method, refer to Weaver et al. (2021) <https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008755>.
Authors:
crosstalkr_1.0.5.tar.gz
crosstalkr_1.0.5.tar.gz(r-4.5-noble)crosstalkr_1.0.5.tar.gz(r-4.4-noble)
crosstalkr_1.0.5.tgz(r-4.4-emscripten)crosstalkr_1.0.5.tgz(r-4.3-emscripten)
crosstalkr.pdf |crosstalkr.html✨
crosstalkr/json (API)
# Install 'crosstalkr' in R: |
install.packages('crosstalkr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 7 months agofrom:afb1affa18. Checks:OK: 2. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Dec 14 2024 |
R-4.5-linux-x86_64 | OK | Dec 14 2024 |
Exports:add_valueas_gene_symbolbootstrap_nullcalc_dnp_icalc_npcalc_np_allcalc_np_icombine_nullcompute_crosstalkcompute_dnpcompute_npcompute_null_dnpcrosstalk_subgraphdist_calcexperiment_breakoutfinal_combineget_random_graphgfiltergfilter.ctgfilter.igraph_methodgfilter.npgfilter.valueload_ppinode_repressionnorm_colsumplot_ctppi_intersectionppi_unionprep_biogridprep_stringdbsparseRWRsupported_speciestidy_expressionto_taxon_id
Dependencies:abindAnnotationDbiAnnotationFilteraskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobcachemcaToolschronclicliprcodetoolscolorspacecpp11crayoncurlDBIDelayedArraydoParalleldplyrensembldbfansifarverfastmapforeachformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2gluegplotsgsubfngtablegtoolshashhmshttrigraphIRangesisobanditeratorsjsonliteKEGGRESTKernSmoothlabelinglambda.rlatticelazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplogrplotrixplyrpngprettyunitsprogressProtGenericsprotopurrrR6RColorBrewerRcppRCurlreadrrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsscalessnowSparseArraysqldfSTRINGdbstringistringrSummarizedExperimentsystibbletidyrtidyselecttzdbUCSC.utilsutf8vctrsviridisLitevroomwithrXMLXVectoryamlzlibbioc