Package: coxme 2.2-22
Terry M. Therneau
coxme: Mixed Effects Cox Models
Fit Cox proportional hazards models containing both fixed and random effects. The random effects can have a general form, of which familial interactions (a "kinship" matrix) is a particular special case. Note that the simplest case of a mixed effects Cox model, i.e. a single random per-group intercept, is also called a "frailty" model. The approach is based on Ripatti and Palmgren, Biometrics 2002.
Authors:
coxme_2.2-22.tar.gz
coxme_2.2-22.tar.gz(r-4.5-noble)coxme_2.2-22.tar.gz(r-4.4-noble)
coxme_2.2-22.tgz(r-4.4-emscripten)coxme_2.2-22.tgz(r-4.3-emscripten)
coxme.pdf |coxme.html✨
coxme/json (API)
NEWS
| # Install 'coxme' in R: |
| install.packages('coxme', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- eortc - Simulated data set based on an EORTC trial
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:d5eefc09a0. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 23 2024 |
| R-4.5-linux-x86_64 | OK | Oct 23 2024 |
Exports:coxmecoxme.controlcoxmeFullcoxmeMlistexpand.nestedfixed.effectsfixeflmekinlmekin.controlrandom.effectsranefVarCorr
Coxme and the Laplace Approximation
Rendered fromlaplace.Rnwusingutils::Sweaveon Oct 23 2024.Last update: 2019-07-04
Started: 2011-12-27
Mixed Effects Cox Models
Rendered fromcoxme.Rnwusingutils::Sweaveon Oct 23 2024.Last update: 2019-07-04
Started: 2011-12-27
Special Variance Structures
Rendered fromvariance.Rnwusingutils::Sweaveon Oct 23 2024.Last update: 2024-03-03
Started: 2011-12-27
The lmekin function
Rendered fromlmekin.Rnwusingutils::Sweaveon Oct 23 2024.Last update: 2024-03-03
Started: 2011-12-27
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Analysis of Deviance for a Cox model. | anova.coxme anova.coxmelist |
| Fit a mixed effects Cox model | coxme |
| Auxillary parameters for controlling coxme fits. | coxme.control |
| Coxme regression output object | coxme.object |
| Variance family function for coxme fits. | coxmeFull |
| Coxme variance function | coxmeMlist |
| Simulated data set based on an EORTC trial | eortc |
| Expand nested factors | expand.nested |
| Import from package 'nlme' | fixed.effects fixef |
| Extraction functions for Coxme | fixef.coxme ranef.coxme VarCorr.coxme vcov.coxme |
| Extraction functions for Lmekin | fixef.lmekin logLik.lmekin ranef.lmekin VarCorr.lmekin vcov.lmekin |
| Fit a linear mixed effects model | lmekin |
| Auxillary parameters for controlling lmekin fits. | lmekin.control |
| lmekin object | lmekin.object |
| The logLik method for coxme objects | logLik.coxme |
| Predictions for a coxme object. | predict.coxme |
| Print method for a coxme fit. | print.coxme |
| Print function for lmekin | print.lmekin |
| Import from package 'nlme' | random.effects ranef |
| Import from package 'nlme' | VarCorr |