Package: coreheat 0.3.2

Vidal Fey

coreheat: Correlation Heatmaps

Create correlation heatmaps from a numeric matrix. Ensembl Gene ID row names can be converted to Gene Symbols using, e.g., BioMart. Optionally, data can be clustered and filtered by correlation, tree cutting and/or number of missing values. Genes of interest can be highlighted in the plot and correlation significance be indicated by asterisks encoding corresponding P-Values. Plot dimensions and label measures are adjusted automatically by default. The plot features rely on the heatmap.n2() function in the 'heatmapFlex' package.

Authors:Vidal Fey [aut, cre], Henri Sara [aut]

coreheat_0.3.2.tar.gz
coreheat_0.3.2.tar.gz(r-4.7-any)coreheat_0.3.2.tar.gz(r-4.6-any)
coreheat_0.3.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
coreheat/json (API)

# Install 'coreheat' in R:

install.packages('coreheat', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.00 score 3 scripts 311 downloads 2 exports 113 dependencies

Last updated from:29d3c9fb89. Checks:4 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	251
source / vignettes	OK	340
linux-release-x86_64	OK	256
wasm-release	OK	180

Exports:cormap_filt cormap2

Dependencies:AnnotationDbi askpass assertthat backports base64enc Biobase BiocFileCache BiocGenerics biomaRt Biostrings bit bit64 blob bslib cachem checkmate cli cluster codetools colorspace convertid cpp11 crayon curl data.table DBI dbplyr digest doParallel dplyr dynamicTreeCut evaluate farver fastcluster fastmap filelock fontawesome foreach foreign Formula fs generics ggplot2 glue gridExtra gtable heatmapFlex Heatplus highr Hmisc hms htmlTable htmltools htmlwidgets httr httr2 impute IRanges isoband iterators jquerylib jsonlite KEGGREST knitr labeling lattice lifecycle magrittr Matrix matrixStats memoise mime nnet openssl pillar pkgconfig plyr png preprocessCore prettyunits progress purrr R6 rappdirs RColorBrewer Rcpp rlang rmarkdown rpart RSQLite rstudioapi S4Vectors S7 sass scales Seqinfo stringi stringr survival sys tibble tidyr tidyselect tinytex utf8 vctrs viridisLite WGCNA withr xfun xml2 XVector yaml

Correlation Heatmaps

Rendered fromcoreheat-vignette.Rmdusingknitr::rmarkdown

Last update: 2026-02-09
Started: 2021-09-19

Help page	Topics
Cluster a correlation matrix and return the sorted matrix for plotting.	clust_cormap
Automatically split clusters based on noise level and hierarchy	cormap_filt
Draw correlation maps from large datasets.	cormap2
Helper function to calculate the correlation matrix.	eset_cor

Package: coreheat 0.3.2

coreheat: Correlation Heatmaps

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Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)