Package: colocPropTest 0.9.1

Chris Wallace

colocPropTest: Proportional Testing for Colocalisation Analysis

Colocalisation analysis tests whether two traits share a causal genetic variant in a specified genomic region. Proportional testing for colocalisation has been previously proposed [Wallace (2013) <doi:10.1002/gepi.21765>], but is reimplemented here to overcome barriers to its adoption. Its use is complementary to the fine- mapping based colocalisation method in the 'coloc' package, and may be used in particular to identify false "H3" conclusions in 'coloc'.

Authors:Chris Wallace [aut, cre]

colocPropTest_0.9.1.tar.gz
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colocPropTest.pdf |colocPropTest.html✨
colocPropTest/json (API)

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6 exports 0.00 score 71 dependencies 2 scripts 884 downloads

Last updated 3 months agofrom:8cbd07caf7. Checks:OK: 2. Indexed: yes.

Exports:adjust_LDestproplpplot_ellipsesrun_propteststag

Dependencies:abindbackportsbootbroomcarcarDataclicoloccolorspacecowplotcpp11crayondata.tableDerivdoBydplyrfansifarvergenericsggplot2gluegridExtragtableirlbaisobandlabelinglatticelifecyclelme4magrittrMASSMatrixMatrixModelsmatrixStatsmgcvmicrobenchmarkminqamixsqpmodelrmunsellnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigplyrpurrrquantregR6RColorBrewerRcppRcppArmadilloRcppEigenreshaperlangscalesSparseMstringistringrsurvivalsusieRtibbletidyrtidyselectutf8vctrsviridisviridisLitewithr