Package: colocPropTest 0.9.1

Chris Wallace

colocPropTest: Proportional Testing for Colocalisation Analysis

Colocalisation analysis tests whether two traits share a causal genetic variant in a specified genomic region. Proportional testing for colocalisation has been previously proposed [Wallace (2013) <doi:10.1002/gepi.21765>], but is reimplemented here to overcome barriers to its adoption. Its use is complementary to the fine- mapping based colocalisation method in the 'coloc' package, and may be used in particular to identify false "H3" conclusions in 'coloc'.

Authors:Chris Wallace [aut, cre]

colocPropTest_0.9.1.tar.gz
colocPropTest_0.9.1.tar.gz(r-4.5-noble)colocPropTest_0.9.1.tar.gz(r-4.4-noble)
colocPropTest_0.9.1.tgz(r-4.4-emscripten)colocPropTest_0.9.1.tgz(r-4.3-emscripten)
colocPropTest.pdf |colocPropTest.html✨
colocPropTest/json (API)

# Install 'colocPropTest' in R:
install.packages('colocPropTest', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.70 score 2 scripts 525 downloads 6 exports 72 dependencies

Last updated 5 months agofrom:8cbd07caf7. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 09 2024
R-4.5-linuxOKNov 09 2024

Exports:adjust_LDestproplpplot_ellipsesrun_propteststag

Dependencies:abindbackportsbootbroomcarcarDataclicoloccolorspacecowplotcpp11crayondata.tableDerivdoBydplyrfansifarverFormulagenericsggplot2gluegridExtragtableirlbaisobandlabelinglatticelifecyclelme4magrittrMASSMatrixMatrixModelsmatrixStatsmgcvmicrobenchmarkminqamixsqpmodelrmunsellnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigplyrpurrrquantregR6RColorBrewerRcppRcppArmadilloRcppEigenreshaperlangscalesSparseMstringistringrsurvivalsusieRtibbletidyrtidyselectutf8vctrsviridisviridisLitewithr

Proportional colocalisation

Chris Wallace

Rendered fromintroduction.Rmdusingknitr::rmarkdownon Nov 09 2024.

Last update: 2024-06-12
Started: 2024-06-12