Package: cellVolumeDist 1.4

Katharine M. Mullen

cellVolumeDist: Functions to Fit Cell Volume Distributions and Thereby Estimate Cell Growth Rates and Division Times

Implements a methodology for using cell volume distributions to estimate cell growth rates and division times that is described in the paper entitled, "Cell Volume Distributions Reveal Cell Growth Rates and Division Times", by Michael Halter, John T. Elliott, Joseph B. Hubbard, Alessandro Tona and Anne L. Plant, which is in press in the Journal of Theoretical Biology. In order to reproduce the analysis used to obtain Table 1 in the paper, execute the command "example(fitVolDist)".

Authors:Katharine M. Mullen, Michael Halter, John Lu and Nathan Dodder

cellVolumeDist_1.4.tar.gz
cellVolumeDist_1.4.tar.gz(r-4.5-noble)cellVolumeDist_1.4.tar.gz(r-4.4-noble)
cellVolumeDist_1.4.tgz(r-4.4-emscripten)cellVolumeDist_1.4.tgz(r-4.3-emscripten)
cellVolumeDist.pdf |cellVolumeDist.html✨
cellVolumeDist/json (API)

# Install 'cellVolumeDist' in R:
install.packages('cellVolumeDist', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • Aph0_a - Volume distribution data for A10 vSMC cell cultures
  • Aph0_b - Volume distribution data for A10 vSMC cell cultures
  • Aph0_c - Volume distribution data for A10 vSMC cell cultures
  • Aph0_d - Volume distribution data for A10 vSMC cell cultures
  • Aph100_a - Volume distribution data for A10 vSMC cell cultures
  • Aph100_b - Volume distribution data for A10 vSMC cell cultures
  • Aph100_c - Volume distribution data for A10 vSMC cell cultures
  • Aph100_d - Volume distribution data for A10 vSMC cell cultures
  • Aph50_a - Volume distribution data for A10 vSMC cell cultures
  • Aph50_b - Volume distribution data for A10 vSMC cell cultures
  • Aph50_c - Volume distribution data for A10 vSMC cell cultures
  • Aph50_d - Volume distribution data for A10 vSMC cell cultures
  • NIH3T3_a - Volume distribution data for NIH3T3 cell cultures
  • NIH3T3_b - Volume distribution data for NIH3T3 cell cultures
  • NIH3T3_c - Volume distribution data for NIH3T3 cell cultures
  • NIH3T3_d - Volume distribution data for NIH3T3 cell cultures
  • tAph0_a - Volume distribution data for A10 vSMC cell cultures
  • tAph0_b - Volume distribution data for A10 vSMC cell cultures
  • tAph0_c - Volume distribution data for A10 vSMC cell cultures
  • tAph0_d - Volume distribution data for A10 vSMC cell cultures
  • tAph100_a - Volume distribution data for A10 vSMC cell cultures
  • tAph100_b - Volume distribution data for A10 vSMC cell cultures
  • tAph100_c - Volume distribution data for A10 vSMC cell cultures
  • tAph100_d - Volume distribution data for A10 vSMC cell cultures
  • tAph50_a - Volume distribution data for A10 vSMC cell cultures
  • tAph50_b - Volume distribution data for A10 vSMC cell cultures
  • tAph50_c - Volume distribution data for A10 vSMC cell cultures
  • tAph50_d - Volume distribution data for A10 vSMC cell cultures
  • tNIH3T3_a - Volume distribution data for NIH3T3 cell cultures
  • tNIH3T3_b - Volume distribution data for NIH3T3 cell cultures
  • tNIH3T3_c - Volume distribution data for NIH3T3 cell cultures
  • tNIH3T3_d - Volume distribution data for NIH3T3 cell cultures
  • volumes_A10_vSMC - Volume distribution data for A10 vSMC cell cultures
  • volumes_nih3t3 - Volume distribution data for NIH3T3 cell cultures

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 3 scripts 212 downloads 3 exports 6 dependencies

Last updated 3 years agofrom:23786af9c8. Checks:OK: 1 NOTE: 1. Indexed: yes.

TargetResultDate
Doc / VignettesOKDec 15 2024
R-4.5-linuxNOTEDec 15 2024

Exports:fitFunfitVolDistvolEq7

Dependencies:bitopscaToolsgplotsgtoolsKernSmoothminpack.lm

Readme and manuals

Help Manual

Help pageTopics
Functions to fit cell volume distributions and thereby estimate cell growth rates and division timescellVolumeDist-package cellVolumeDist
Volume distribution data for A10 vSMC cell culturesA10_vSMC_volume_data Aph0_a Aph0_b Aph0_c Aph0_d Aph100_a Aph100_b Aph100_c Aph100_d Aph50_a Aph50_b Aph50_c Aph50_d tAph0_a tAph0_b tAph0_c tAph0_d tAph100_a tAph100_b tAph100_c tAph100_d tAph50_a tAph50_b tAph50_c tAph50_d volumes_A10_vSMC
Model for the distribution of cell volumesfitFun
Fit a model for cell volume distribution under least squares criteria.fitVolDist
Volume distribution data for NIH3T3 cell culturesNIH3T3_a NIH3T3_b NIH3T3_c NIH3T3_d NIH3T3_volume_data tNIH3T3_a tNIH3T3_b tNIH3T3_c tNIH3T3_d volumes_nih3t3
Model for the distribution of cell volumesvolEq7