Package: cancerradarr 3.0.0

Damien Georges

cancerradarr: Cancer RADAR Project Tool

Cancer RADAR is a project which aim is to develop an infrastructure that allows quantifying the risk of cancer by migration background across Europe. This package contains a set of functions cancer registries partners should use to reshape 5 year-age group cancer incidence data into a set of summary statistics (see Boyle & Parkin (1991, ISBN:978-92-832-1195-2)) in lines with Cancer RADAR data protections rules.

Authors:Nienke Alberts [aut], Damien Georges [aut, cre], Stefano Rosso [aut], Iacopo Baussano [aut]

cancerradarr_3.0.0.tar.gz
cancerradarr_3.0.0.tar.gz(r-4.7-any)cancerradarr_3.0.0.tar.gz(r-4.6-any)
cancerradarr_3.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
cancerradarr/json (API)

# Install 'cancerradarr' in R:

install.packages('cancerradarr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

chopped.vector.list - Pre-computed chopped combination for vectors size 1 to 18
dat.aggr - Geographical aggregation used for cancerradarr
dat.asr.cat - Burden of cancer aggregation category used for cancerradarr
dat.cob - Countries label and countries codes
globocan.2022.eu - European countries age-specific cancer burden from GLOBOCAN 2022

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

quarto

3.30 score 257 downloads 22 exports 47 dependencies

Last updated from:fb74695223. Checks:4 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	350
source / vignettes	OK	208
linux-release-x86_64	OK	335
wasm-release	OK	146

Exports:age_standardized_incidence_rates aggregated_ageg_name chop_vector create_canradar_summary_file create_registry_input_file create_static_report custom_ageg_aggregation diagnose_input_file incidence_rates incidence_rates_difference incidence_rates_ratio indirect_proportional_incidence_ratio indirect_standardized_incidence_ratio open_canradar_dictionary proportional_rates read_cancerradar_output_01 read_cancerradar_output_02 read_cancerradar_output_03 run_dynamic_report standardized_incidence_rate_difference standardized_incidence_rate_ratio validate_age_groups

Dependencies:base64enc bslib cachem cli cpp11 digest dplyr epitools evaluate fastmap fontawesome fs generics glue gtools highr htmltools jquerylib jsonlite knitr lifecycle magrittr memoise mime openxlsx pillar pkgconfig plyr purrr R6 rappdirs Rcpp rlang rmarkdown sass stringi stringr tibble tidyr tidyselect tinytex utf8 vctrs withr xfun yaml zip

getting-started

Rendered fromgetting-started.qmdusingquarto::html

Last update: 2025-10-28
Started: 2025-07-18

Help page	Topics
Age-standardized incidence rate (asir)	age_standardized_incidence_rates
Compute the aggregated age group names from a vector of more detailed age groups	aggregated_ageg_name
Generate all the possible combinations of slices in a chopped vector	chop_vector
Pre-computed chopped combination for vectors size 1 to 18	chopped.vector.list
Compute summary statistics from 5 years age-group cancer registry data	create_canradar_summary_file
Create a template file to be filled by cancer registry partners	create_registry_input_file
Create a static report from cancer RADAR output file	create_static_report
Smart aggregation of cancer cases per age group	custom_ageg_aggregation
Geographical aggregation used for cancerradarr	dat.aggr
Burden of cancer aggregation category used for cancerradarr	dat.asr.cat
Countries label and countries codes	dat.cob
Diagnose Input File for Data Quality Issues	diagnose_input_file
European countries age-specific cancer burden from GLOBOCAN 2022	globocan.2022.eu
Compute crude incidence rates	incidence_rates
Compute incidence rates difference	incidence_rates_difference
Compute incidence rates ratio	incidence_rates_ratio
Compute the indirect proportional incidence ratio (pir)	indirect_proportional_incidence_ratio
Compute indirect standardized incidence ratio (sir)	indirect_standardized_incidence_ratio
Open cancer RADAR output file dictionary	open_canradar_dictionary
Compute proportional rates	proportional_rates
Read cancer registry summary statistics (non age-specific)	read_cancerradar_output_01
Read cancer registry summary statistics (age-specific incidence rate and proportional rates)	read_cancerradar_output_02
Read cancer registry summary statistics (age-specific number of cancer cases)	read_cancerradar_output_03
Create a dynamic report from cancer RADAR output file	run_dynamic_report
Age-standardized incidence rates differences (asird)	standardized_incidence_rate_difference
Age-standardized incidence rates ratio (asirr)	standardized_incidence_rate_ratio
Validate Age Group Labels	validate_age_groups

Package: cancerradarr 3.0.0

cancerradarr: Cancer RADAR Project Tool

Citation

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)