Package: c3net 1.1.1.1

Gokmen Altay

c3net: Inferring Large-Scale Gene Networks with C3NET

Allows inferring gene regulatory networks with direct physical interactions from microarray expression data using C3NET.

Authors:Gokmen Altay, Frank Emmert-Streib

# Install 'c3net' in R:

install.packages('c3net', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

Last updated from:dfa738a832. Checks:6 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	149
source / vignettes	OK	170
linux-release	OK	153
windows-devel	OK	97
windows-release	OK	100
wasm-release	OK	108

Help page	Topics
C3NET second step: Selecting maximum valued elements	c3
All in one function to infer network with C3NET	c3net
Validating the inferred network	checknet
Copula transformation of data set	copula
Example data set	expdata
Constructing mutual information matrix	makemim
Plotting the inferred network	netplot
Elimination of nonsignificant edges by application of a procedure for multiple testing correction	sigtestMTC
Significance test for elimination of nonsignificant edges	sigtestp
Reference, e.g. true, network of the example data set	truenet