Package: bsam 1.1.3

Ian Jonsen

bsam: Bayesian State-Space Models for Animal Movement

Tools to fit Bayesian state-space models to animal tracking data. Models are provided for location filtering, location filtering and behavioural state estimation, and their hierarchical versions. The models are primarily intended for fitting to ARGOS satellite tracking data but options exist to fit to other tracking data types. For Global Positioning System data, consider the 'moveHMM' package. Simplified Markov Chain Monte Carlo convergence diagnostic plotting is provided but users are encouraged to explore tools available in packages such as 'coda' and 'boa'.

Authors:Ian Jonsen [aut, cre], Sophie Bestley [ctb], Simon Wotherspoon [ctb], Michael Sumner [ctb], Joanna Mills Flemming [ctb]

bsam_1.1.3.tar.gz
bsam_1.1.3.tar.gz(r-4.5-noble)bsam_1.1.3.tar.gz(r-4.4-noble)
bsam_1.1.3.tgz(r-4.4-emscripten)bsam_1.1.3.tgz(r-4.3-emscripten)
bsam.pdf |bsam.html✨
bsam/json (API)
NEWS

# Install 'bsam' in R:
install.packages('bsam', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ianjonsen/bsam/issues

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • ellie1 - Elephant seal Argos satellite data
  • ellie2 - Elephant seal Argos satellite data

3.19 score 31 scripts 592 downloads 12 mentions 13 exports 43 dependencies

Last updated 4 years agofrom:a43310ca05. Checks:OK: 1 NOTE: 1. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 03 2024
R-4.5-linuxNOTENov 03 2024

Exports:dat4jagsdiag_ssmdiagSSMfit_ssmfitSSMget_summaryhssmmap_ssmplot_fitplotSSMsimulatessmtpar

Dependencies:clicodacolorspacecpp11dplyrexpmfansifarvergenericsggplot2gluegridExtragtableisobandlabelinglatticelifecyclelubridatemagrittrMASSMatrixmgcvmsmmunsellmvtnormnlmepillarpkgconfigR6RColorBrewerrjagsrlangrworldxtrascalesspsurvivaltibbletidyselecttimechangeutf8vctrsviridisLitewithr