Package: bravo 4.1.0
bravo: Bayesian Screening and Variable Selection
Performs Bayesian variable screening and selection for ultra-high dimensional linear regression models.Also contains an user friendly web application to perform multi trait GWAS.
Authors:
bravo_4.1.0.tar.gz
bravo_4.1.0.tar.gz(r-4.7-arm64)bravo_4.1.0.tar.gz(r-4.7-x86_64)bravo_4.1.0.tar.gz(r-4.6-arm64)bravo_4.1.0.tar.gz(r-4.6-x86_64)
bravo_4.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
bravo/json (API)
| # Install 'bravo' in R: |
| install.packages('bravo', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:343f2f3d77. Checks:6 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-arm64 | OK | 141 | ||
| linux-devel-x86_64 | OK | 144 | ||
| source / vignettes | OK | 188 | ||
| linux-release-arm64 | OK | 154 | ||
| linux-release-x86_64 | OK | 148 | ||
| wasm-release | OK | 111 |
Exports:bitscalc.runtimedense_to_sparse_converterdense2sparsemip.svenparameter_selectionpredict.svensvensveneticssvenetics_pipeline
Dependencies:base64encbslibcachemclicodetoolscommonmarkdigestdoParalleldplyrfastmapfontawesomeforeachfsgenericsgluehtmltoolshttpuviteratorsjquerylibjsonlitelaterlatticelifecyclemagrittrMatrixmemoisememusemimeotelpillarpkgconfigpromisesR6rappdirsRcpprlangsassshinyshinyjssourcetoolstibbletidyselectutf8vctrswithrxtable
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Bayesian Iterated Screening (ultra-high, high or low dimensional). | bits |
| Estimate SVEN Runtime | calc.runtime |
| Launch the Sparse Converter Shiny App | dense_to_sparse_converter |
| Convert numeric genotype matrix to sparse matrix | dense2sparse |
| Compute marginal inclusion probabilities from a fitted "sven" object. | mip.sven |
| Select Optimal Tuning Parameters | parameter_selection |
| Make predictions from a fitted "sven" object. | predict.sven |
| Selection of variables with embedded screening using Bayesian methods (SVEN) in Gaussian linear models (ultra-high, high or low dimensional). | sven |
| Launch the SVENETICS Shiny App | svenetics |
| Full Multi-Trait GWAS Pipeline | svenetics_pipeline |
