Package: bigsnpr 1.12.18
bigsnpr: Analysis of Massive SNP Arrays
Easy-to-use, efficient, flexible and scalable tools for analyzing massive SNP arrays. Privé et al. (2018) <doi:10.1093/bioinformatics/bty185>.
Authors:
bigsnpr_1.12.18.tar.gz
bigsnpr_1.12.18.tar.gz(r-4.5-noble)bigsnpr_1.12.18.tar.gz(r-4.4-noble)
bigsnpr_1.12.18.tgz(r-4.4-emscripten)bigsnpr_1.12.18.tgz(r-4.3-emscripten)
bigsnpr.pdf |bigsnpr.html✨
bigsnpr/json (API)
NEWS
# Install 'bigsnpr' in R: |
install.packages('bigsnpr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/privefl/bigsnpr/issues
Pkgdown:https://privefl.github.io
- LD.wiki34 - Long-range LD regions
Last updated 10 days agofrom:bb5795cc4d. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 26 2024 |
R-4.5-linux-x86_64 | OK | Nov 26 2024 |
Exports:as_SFBMbedbed_autoSVDbed_clumpingbed_corbed_countsbed_cprodVecbed_ld_scoresbed_MAFbed_pcadaptbed_prodVecbed_projectPCAbed_projectSelfPCAbed_randomSVDbed_scaleBinombed_tcrossprodSelfCODE_012CODE_DOSAGECODE_IMPUTE_PREDcoef_to_liabdownload_1000Gdownload_beagledownload_genetic_mapdownload_plinkdownload_plink2same_refseq_logsnp_ancestry_summarysnp_asGeneticPossnp_asGeneticPos2snp_attachsnp_attachExtdatasnp_autoSVDsnp_beagleImputesnp_clumpingsnp_corsnp_fakesnp_fastImputesnp_fastImputeSimplesnp_fstsnp_gcsnp_getSampleInfossnp_grid_clumpingsnp_grid_PRSsnp_grid_stackingsnp_indLRLDRsnp_lassosum2snp_ld_scoressnp_ldpred2_autosnp_ldpred2_gridsnp_ldpred2_infsnp_ldscsnp_ldsc2snp_ldsplitsnp_MAFsnp_manhattansnp_matchsnp_MAX3snp_modifyBuildsnp_pcadaptsnp_plinkIBDQCsnp_plinkKINGQCsnp_plinkQCsnp_plinkRmSamplessnp_prodBGENsnp_projectSelfPCAsnp_PRSsnp_pruningsnp_qqsnp_readBedsnp_readBed2snp_readBGENsnp_readBGIsnp_savesnp_scaleAlphasnp_scaleBinomsnp_simuPhenosnp_splitsnp_subsetsnp_thr_correctsnp_writeBedsub_bed
Dependencies:BHbigassertrbigparallelrbigreadrbigsparserbigstatsrbigutilsrbitclicodetoolscolorspacecowplotdata.tableDEoptimRdigestdoParalleldoRNGfansifarverffflockforeachggplot2gluegtableisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnabornlmeparallellypillarpkgconfigpsR6RColorBrewerRcppRcppArmadilloRcppEigenRhpcBLASctlrlangrmiorngtoolsrobustbaseroptimRSpectrarunoncescalestibbletriebeardurltoolsutf8vctrsviridisLitewithr