Package: bifurcatingr 2.1.0

Tamer Elbayoumi

bifurcatingr: Bifurcating Autoregressive Models

Estimation of bifurcating autoregressive models of any order, p, BAR(p) as well as several types of bias correction for the least squares estimators of the autoregressive parameters as described in Zhou and Basawa (2005) <doi:10.1016/j.spl.2005.04.024> and Elbayoumi and Mostafa (2020) <doi:10.1002/sta4.342>. Currently, the bias correction methods supported include bootstrap (single, double and fast-double) bias correction and linear-bias-function-based bias correction. Functions for generating and plotting bifurcating autoregressive data from any BAR(p) model are also included. This new version includes calculating several type of bias-corrected and -uncorrected confidence intervals for the least squares estimators of the autoregressive parameters as described in Elbayoumi and Mostafa (2023) <doi:10.6339/23-JDS1092>.

Authors:Tamer Elbayoumi [aut, cre], Sayed Mostafa [aut]

bifurcatingr_2.1.0.tar.gz
bifurcatingr_2.1.0.tar.gz(r-4.7-any)bifurcatingr_2.1.0.tar.gz(r-4.6-any)
bifurcatingr_2.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
bifurcatingr/json (API)

# Install 'bifurcatingr' in R:

install.packages('bifurcatingr', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

ecoli - Lifetimes (in minutes) of lineage E. coli cells.
emt6 - Mean Lifetimes (in tenths of hours) of EMT6 (BALB/c mouse mammary tumor) cells.

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.70 score 4 scripts 242 downloads 18 exports 20 dependencies

Last updated from:19f98c70d6. Checks:4 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	164
source / vignettes	OK	222
linux-release-x86_64	OK	158
wasm-release	OK	133

Exports:bfa_boot_ci bfa_boot_ls_bc bfa_boot1_ls bfa_boot2_ls bfa_boot2fast_ls bfa_lbc_ls bfa_ls bfa_ls_bc bfa_ls_bc_ci bfa_perc_bc_ci bfa_perc_ci bfa_scatterplot bfa_subtree bfa_tree_gen bfa_tree_plot boot_bca_ci rcontmnorm rmnorm

Dependencies:cubature fBasics fMultivar gss lattice MASS Matrix MatrixModels mnormt mvtnorm numDeriv quantreg Rcpp sn SparseM spatial stabledist survival timeDate timeSeries

bifurcatingr

Rendered frombifurcatingr.Rmdusingknitr::rmarkdown

Last update: 2024-04-09
Started: 2023-06-22

Help page	Topics
Standard Normal Bootstrap Confidence Interval Function	bfa_boot_ci
Bootstrap of Bias-Correction Least Squares Estimators of BAR(p) Models	bfa_boot_ls_bc
Single Bootstrap of Least Squares Estimators of BAR(p) Models	bfa_boot1_ls
Double Bootstrap of Least Squares Estimators of BAR(p) Models	bfa_boot2_ls
Fast Double Bootstrap of Least Squares Estimators of BAR(p) Models	bfa_boot2fast_ls
Linear Function Bias-Corrected Estimators for BAR(p); p=1,2,...,6	bfa_lbc_ls
Least Squares Estimation of Bifurcating Autoregressive Models	bfa_ls
Bias-Corrected Least Squares Estimators for Bifurcating Autoregressive Models	bfa_ls_bc
Bias-Corrected Confidence intervals of Least Squares Estimators for Bifurcating Autoregressive Models	bfa_ls_bc_ci
Bias Correction Percentile Confidence Interval Function	bfa_perc_bc_ci
Percentile Bootstrap Confidence Interval Function	bfa_perc_ci
Scatterplots for Bifurcating Autoregressive Data	bfa_scatterplot
Subtree Extractor	bfa_subtree
Bifurcating Autoregressive Tree generator	bfa_tree_gen
Plotting Bifurcating Autoregressive Trees	bfa_tree_plot
Bias-Corrected and Accelerated bootstrap Confidence Interval (BCa) Function.	boot_bca_ci
Lifetimes (in minutes) of lineage E. coli cells.	ecoli
Mean Lifetimes (in tenths of hours) of EMT6 (BALB/c mouse mammary tumor) cells.	emt6
Contaminated Normal Generator	rcontmnorm
Multivariate Normal Generator	rmnorm

Package: bifurcatingr 2.1.0

bifurcatingr: Bifurcating Autoregressive Models

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Help Manual

Usage by other packages (reverse dependencies)