Introduction to the benthos-package
Introduction | Loading the package | Sample data set | Preprocessing | Selecting variables and observations | Standardization of taxon names | Genus to species conversion | Data pooling | Biodiversity measures | Measures of species abundance | Total abundance | Abundance | Measures of species richness | Species richness | Margalef's index of diversity | Rygg's index of diversity | Hurlbert's $\mathrm{E}(S_n)$ | Measures of heterogeneity/evenness | Simpson's Measure of Concentration | Hurlbert's Probability of Interspecific Encounter (PIE) | Shannon's Index | Hill's Diversity Numbers | Measures of species sensitivity | AZTI Marine Biotic Index (AMBI) | Infaunal Trophic Index (ITI) | Calculating multiple biodiversity measures in one go | Advanced topics | Number of pool runs and species richness | References
Rendered frombenthos.Rmdusingknitr::rmarkdown