Package: bedrockbio 2.0.0
Liam Abbott
bedrockbio: Open-Access Computational Biology Datasets
Efficiently access the 'Bedrock Bio' library of open-access computational biology datasets. Lazily query datasets backed by 'DuckDB' and 'Apache Iceberg', with support for predicate pushdown and column projection to the cloud storage backend. This enables quick, iterative access to otherwise massive, unwieldy datasets without downloading them in full. See <https://bedrock.bio> for available datasets and documentation.
Authors:
bedrockbio_2.0.0.tar.gz
bedrockbio_2.0.0.tar.gz(r-4.7-any)bedrockbio_2.0.0.tar.gz(r-4.6-any)
bedrockbio_2.0.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
bedrockbio/json (API)
| # Install 'bedrockbio' in R: |
| install.packages('bedrockbio', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/bedrock-bio/bedrock-bio-client/issues
Last updated from:7e3cddfebf. Checks:4 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 129 | ||
| source / vignettes | OK | 222 | ||
| linux-release-x86_64 | OK | 125 | ||
| wasm-release | OK | 107 |
Exports:describe_namespacedescribe_tablelist_namespaceslist_tablesload_table
Dependencies:blobclicpp11curlDBIdbplyrdplyrduckdbgenericsgluejsonlitelifecyclemagrittrpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Describe a namespace: its name, citation, license, context, and tables | describe_namespace |
| Describe a table: its context, columns, and partitions | describe_table |
| List available namespaces (data sources) | list_namespaces |
| List available tables, optionally filtered to one namespace | list_tables |
| Lazily query a table | load_table |