Package: bamdit 3.4.3

Pablo Emilio Verde

bamdit: Bayesian Meta-Analysis of Diagnostic Test Data

Provides a new class of Bayesian meta-analysis models that incorporates a model for internal and external validity bias. In this way, it is possible to combine studies of diverse quality and different types. For example, we can combine the results of randomized control trials (RCTs) with the results of observational studies (OS).

Authors:Pablo Emilio Verde [aut, cre]

bamdit_3.4.3.tar.gz
bamdit_3.4.3.tar.gz(r-4.5-noble)bamdit_3.4.3.tar.gz(r-4.4-noble)
bamdit_3.4.3.tgz(r-4.4-emscripten)bamdit_3.4.3.tgz(r-4.3-emscripten)
bamdit.pdf |bamdit.html
bamdit/json (API)

# Install 'bamdit' in R:
install.packages('bamdit', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Uses libs:
  • jags– Just Another Gibbs Sampler for Bayesian MCMC
  • c++– GNU Standard C++ Library v3
Datasets:
  • ct - Diagnosis of appendicities with computer tomography scans
  • diabetes - Systematic review which compares the accuracy of HbA1c vs FPG in diabetes
  • ep - Ectopic pregnancy vs. all other pregnancies data
  • glas - Tumor markers in the diagnosis of primary bladder cancer.
  • gould - Accuracy of Positron Emission Tomography for Diagnosis of Pulmonary Nodules and Mass Lesions
  • mri - Diagnosis of lymph node metastasis with magnetic resonance imaging
  • rapt - Systematic reviews of clinical decision tools for acute abdominal pain
  • safdar05 - Diagnosis of Intravascular Device-Related Bloodstream Infection
  • scheidler - Radiological evaluation of lymph node metastases in patients with cervical cancer: a meta-analysis.
  • skin - Accuracy of Computer-Aided Diagnosis of Melanoma: A Meta-analysis.
  • skin2 - Accuracy of Computer-Aided Diagnosis of Melanoma: A Comparative Meta-analysis.

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.92 score 14 scripts 542 downloads 2 mentions 7 exports 72 dependencies

Last updated 21 days agofrom:99588dbcd2. Checks:OK: 2. Indexed: no.

TargetResultDate
Doc / VignettesOKNov 23 2024
R-4.5-linuxOKNov 23 2024

Exports:bsrocmetadiagplotcompareplotcredibilityplotdataplotsespplotw

Dependencies:abindbase64encbootbslibcachemclicodacolorspacecolourpickercommonmarkcrayondigestevaluatefansifarverfastmapfontawesomefsggExtraggplot2gluegridExtragtablehighrhtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlatticelifecyclemagrittrMASSMatrixmemoisemgcvmimeminiUImunsellnlmepillarpkgconfigpromisesR2jagsR2WinBUGSR6rappdirsRColorBrewerRcpprjagsrlangrmarkdownsassscalesshinyshinyjssourcetoolsstringistringrtibbletinytexutf8vctrsviridisLitewithrxfunxtableyaml