The aweSOM package | Importing data and training a SOM | Assessing the quality of the map | Superclasses of SOM | Plotting general map information | Plotting numeric variables on the map | Plotting a categorical variable on the map | Choosing the number of superclasses
Package: aweSOM 1.3
Julien Boelaert
aweSOM: Interactive Self-Organizing Maps
Self-organizing maps (also known as SOM, see Kohonen (2001) <doi:10.1007/978-3-642-56927-2>) are a method for dimensionality reduction and clustering of continuous data. This package introduces interactive (html) graphics for easier analysis of SOM results. It also features an interactive interface, for push-button training and visualization of SOM on numeric, categorical or mixed data, as well as tools to evaluate the quality of SOM.
Authors:
aweSOM_1.3.tar.gz
aweSOM_1.3.tar.gz(r-4.7-any)aweSOM_1.3.tar.gz(r-4.6-any)
aweSOM_1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
aweSOM/json (API)
| # Install 'aweSOM' in R: |
| install.packages('aweSOM', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:1fbd723aba. Checks:2 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 150 | ||
| source / vignettes | OK | 201 | ||
| linux-release-x86_64 | NOTE | 150 | ||
| wasm-release | OK | 163 |
Exports:aweSOMaweSOMdendrogramaweSOMplotaweSOMreorderaweSOMscreeplotaweSOMsilhouetteaweSOMsmoothdistcdtsomDistsomInitsomQuality
Dependencies:base64encbitbit64bslibcachemcellrangerclassclicliprclustercommonmarkcpp11crayoncrosstalkdata.tabledigestdotCall64DTe1071evaluatefarverfastmapfieldsfontawesomeforcatsforeignfsggplot2gluegridExtragtablehavenhighrhmshtmltoolshtmlwidgetshttpuvisobandjquerylibjsonlitekernlabknitrkohonenlabelinglaterlazyevallifecyclemagrittrmapsMASSmemoisemimemintyotelpillarpkgconfigprettyunitsprogresspromisesproxyR6rappdirsrclipboardRColorBrewerRcppreadODSreadrreadxlrematchrlangrmarkdownS7sassscalesshinysourcetoolsspamstringitibbletidyselecttinytextzdbutf8vctrsviridisviridisLitevroomwithrxfunxtableyamlzip
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Interactive Self-Organizing Maps | aweSOM-package |
| aweSOM interface | aweSOM |
| Dendogram of hierarchical clustering of SOM cells | aweSOMdendrogram |
| Interactive SOM plots | aweSOMplot |
| Reorder variables for SOM plot | aweSOMreorder |
| Screeplot of SOM superclasses | aweSOMscreeplot |
| Silhouette plot of SOM superclasses | aweSOMsilhouette |
| Smooth Distance Plot for SOM | aweSOMsmoothdist |
| Complete disjunctive table | cdt |
| Distance measures on a SOM | somDist |
| Initialize SOM prototypes | somInit |
| SOM quality measures | somQuality |