Package: asremlPlus 4.4.40
asremlPlus: Augments 'ASReml-R' in Fitting Mixed Models and Packages Generally in Exploring Prediction Differences
Assists in automating the selection of terms to include in mixed models when 'asreml' is used to fit the models. Procedures are available for choosing models that conform to the hierarchy or marginality principle, for fitting and choosing between two-dimensional spatial models using correlation, natural cubic smoothing spline and P-spline models. A history of the fitting of a sequence of models is kept in a data frame. Also used to compute functions and contrasts of, to investigate differences between and to plot predictions obtained using any model fitting function. The content falls into the following natural groupings: (i) Data, (ii) Model modification functions, (iii) Model selection and description functions, (iv) Model diagnostics and simulation functions, (v) Prediction production and presentation functions, (vi) Response transformation functions, (vii) Object manipulation functions, and (viii) Miscellaneous functions (for further details see 'asremlPlus-package' in help). The 'asreml' package provides a computationally efficient algorithm for fitting a wide range of linear mixed models using Residual Maximum Likelihood. It is a commercial package and a license for it can be purchased from 'VSNi' <https://vsni.co.uk/> as 'asreml-R', who will supply a zip file for local installation/updating (see <https://asreml.kb.vsni.co.uk/>). It is not needed for functions that are methods for 'alldiffs' and 'data.frame' objects. The package 'asremPlus' can also be installed from <http://chris.brien.name/rpackages/>.
Authors:
asremlPlus_4.4.40.tar.gz
asremlPlus_4.4.40.tar.gz(r-4.5-noble)asremlPlus_4.4.40.tar.gz(r-4.4-noble)
asremlPlus_4.4.40.tgz(r-4.4-emscripten)asremlPlus_4.4.40.tgz(r-4.3-emscripten)
asremlPlus.pdf |asremlPlus.html✨
asremlPlus/json (API)
NEWS
# Install 'asremlPlus' in R: |
install.packages('asremlPlus', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/briencj/asremlplus/issues
- ChickpeaEnd.dat - A large data set comprising the end of imaging data from a chick pea experiment conducted in high-throughput greenhouses
- Ladybird.dat - Data for an experiment to investigate whether ladybirds transfer aphids
- Oats.dat - Data for an experiment to investigate nitrogen response of 3 oats varieties
- WaterRunoff.dat - Data for an experiment to investigate the quality of water runoff over time
- Wheat.dat - Data for a 1976 experiment to investigate 25 varieties of wheat
Last updated 3 days agofrom:dd8d1a2767. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Oct 28 2024 |
R-4.5-linux | OK | Oct 28 2024 |
Exports:addBacktransformsaddBacktransforms.alldiffsaddrm.terms.asremladdrm.terms.asrtestsaddSpatialModeladdSpatialModel.asrtestsaddSpatialModelOnICaddSpatialModelOnIC.asrtestsaddto.test.summaryallDifferencesallDifferences.data.framealldiffsangularangular.modas.alldiffsas.asrtestsas.predictions.frameasrtestsbootREMLRTbootREMLRT.asremlchangeModelOnICchangeModelOnIC.asrtestschangeTermschangeTerms.asrtestschoose.model.asremlchoose.model.asrtestschooseModelchooseModel.asrtestschooseModel.data.framechooseSpatialModelOnICchooseSpatialModelOnIC.asrtestsconvAsremlobjconvAsremlobj.asremlconvEffectNames2DataFrameconvEffectNames2DataFrame.asremlestimateVestimateV.asremlexploreLSDsexploreLSDs.alldiffsfacCombinefacCombine.alldiffsfacRecastfacRecast.alldiffsfacRecodefacRecode.alldiffsfacRenamefacRename.alldiffsgetASRemlVersionLoadedgetFormulaegetFormulae.asremlgetTestEntrygetTestEntry.asrtestsgetTestPvaluegetTestPvalue.asrtestsinfo.critinfo.crit.asremlinfoCriteriainfoCriteria.asremlinfoCriteria.listis.alldiffsis.asrtestsis.predictions.frameisCompoundSymmetricisCompoundSymmetric.matrixiterateiterate.asrtestslinTransformlinTransform.alldiffsloadASRemlVersionmakeTPPSplineMatsmakeTPPSplineMats.data.framenewfitnewfit.asremlnewrcov.asrtestsnum.recodepairdiffsTransformpairdiffsTransform.alldiffspermute.squarepermute.to.zero.lowertripickLSDstatisticspickLSDstatistics.alldiffsplotLSDerrorsplotLSDerrors.alldiffsplotLSDerrors.data.frameplotLSDsplotLSDs.alldiffsplotLSDs.data.frameplotPredictionsplotPredictions.data.frameplotPvaluesplotPvalues.alldiffsplotPvalues.data.frameplotVariofacesplotVariofaces.data.framepower.transformpowerTransformpred.present.asremlpredictiondiffs.asremlpredictparallel.asremlpredictPluspredictPlus.asremlpredictPresentpredictPresent.asremlprint.alldiffsprint.asrtestsprint.LSDdataprint.predictions.frameprint.test.summaryprint.wald.tabprintFormulaeprintFormulae.asremlR2adjR2adj.asremlratioTransformratioTransform.alldiffsrecalc.wald.tab.asremlrecalc.wald.tab.asrtestsrecalcLSDrecalcLSD.alldiffsrecalcWaldTabrecalcWaldTab.asrtestsredoErrorIntervalsredoErrorIntervals.alldiffsreml.lrtreml.lrt.asremlREMLRTREMLRT.asremlrenewClassifyrenewClassify.alldiffsreparamSigDevnreparamSigDevn.asrtestsrmboundaryrmboundary.asremlrmboundary.asrtestssetvariancetermssetvarianceterms.asremlsetvarianceterms.callsig.devn.reparam.asremlsig.devn.reparam.asrtestssimulate.asremlsort.alldiffssort.predictions.framesubset.alldiffssubset.listtestranfixtestranfix.asremltestranfix.asrteststestrcov.asremltestrcov.asrteststestresidualtestresidual.asrteststestswaprantestswapran.asremltestswapran.asrtestsvalidAlldiffsvalidAsrtestsvalidPredictionsFramevariofacesvariofaces.asreml
Dependencies:abindaskpassbackportsbase64encbitopsbootbrewbriobroombslibcachemcallrcarcarDatacaToolsclicliprcodetoolscolorspacecommonmarkcorrplotcowplotcpp11crayoncredentialscurldaeDEoptimRDerivdescdevtoolsdiffobjdigestdoBydoParalleldownlitdplyrellipsisevaluatefansifarverfastmapfontawesomeforeachFormulafsgenericsgertggplot2ggpubrggrepelggsciggsignifghgitcredsgluegridExtragtablehighrhtmltoolshtmlwidgetshttpuvhttr2iniisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelifecyclelme4magrittrMASSMatrixMatrixModelsmemoisemgcvmicrobenchmarkmimeminiUIminqamodelrmunsellnlmenloptrnnetnumDerivopdisDownsamplingopensslpbkrtestpbmcapplypillarpkgbuildpkgconfigpkgdownpkgloadplyrpolynompracmapraiseprettyunitsprocessxprofvispromisespspurrrqqconfqqplotrquantregR6raggrappdirsrcmdcheckRColorBrewerRcppRcppEigenrematch2remotesreshape2rlangrmarkdownrobustbaseroxygen2rprojrootrstatixrstudioapirversionssassscalessessioninfoshinysourcetoolsSparseMstickystringistringrsurvivalsyssystemfontstestthattextshapingtibbletidyrtidyselecttinytextryCatchLogtwosamplesurlcheckerusethisutf8vctrsviridisLitewaldowhiskerwithrxfunxml2xopenxtableyamlzip
asremlPlus-manual
Rendered fromasremlPlus-manual.pdf.asis
usingR.rsp::asis
on Oct 28 2024.Last update: 2019-03-04
Started: 2019-03-04
Ladybird: a predictions example using asreml and asremlPlus
Rendered fromLadybird.asreml.pdf.asis
usingR.rsp::asis
on Oct 28 2024.Last update: 2020-03-16
Started: 2020-03-16
Ladybird: a predictions example using lm and asremlPlus
Rendered fromLadybird.lm.pdf.asis
usingR.rsp::asis
on Oct 28 2024.Last update: 2020-03-16
Started: 2020-03-16
Wheat: a full analysis of an experiment with spatial variation
Rendered fromWheat.analysis.pdf.asis
usingR.rsp::asis
on Oct 28 2024.Last update: 2020-03-16
Started: 2020-03-16
Wheat: using information criteria
Rendered fromWheat.infoCriteria.pdf.asis
usingR.rsp::asis
on Oct 28 2024.Last update: 2020-03-16
Started: 2020-03-16
WheatSpatialModels: a full analysis of an experiment that includes choosing local spatial variation models
Rendered fromWheatSpatialModels.pdf.asis
usingR.rsp::asis
on Oct 28 2024.Last update: 2023-06-13
Started: 2023-06-13