Package: arakno 1.3.0
Pedro Cardoso
arakno: ARAchnid KNowledge Online
Allows the user to connect with the World Spider Catalogue (WSC; <https://wsc.nmbe.ch/>) and the World Spider Trait (WST; <https://spidertraits.sci.muni.cz/>) databases. Also performs several basic functions such as checking names validity, retrieving coordinate data from the Global Biodiversity Information Facility (GBIF; <https://www.gbif.org/>), and mapping.
Authors:
arakno_1.3.0.tar.gz
arakno_1.3.0.tar.gz(r-4.5-noble)arakno_1.3.0.tar.gz(r-4.4-noble)
arakno_1.3.0.tgz(r-4.4-emscripten)arakno_1.3.0.tgz(r-4.3-emscripten)
arakno.pdf |arakno.html✨
arakno/json (API)
| # Install 'arakno' in R: |
| install.packages('arakno', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
- globalTree - Global spider backbone tree.
- wscmap - Matrix matching WSC and ISO3 country codes.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 years agofrom:1db751718b. Checks:OK: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 09 2024 |
| R-4.5-linux | OK | Sep 09 2024 |
Exports:authorsbuildtreechecknamescountriesdistributionendemicslsidmaprecordsspeciestaxonomytraitswsc
Dependencies:apeaskpasscliclusterGenerationcodacodetoolscolorspacecombinatcpp11crulcurldata.tableDEoptimdigestdoParalleldotCall64expmfansifarverfastmatchfieldsforeachgenericsggplot2gluegtablehttpcodehttrigraphisobanditeratorsjsonlitelabelinglatticelazyevallifecyclemagrittrmapsMASSMatrixmgcvmimemnormtmunsellnlmenumDerivoaiopenssloptimParallelphangornphytoolspillarpkgconfigplyrquadprogR6rasterRColorBrewerRcpprgbifrlangrworldmaprworldxtrascalesscatterplot3dspspamstringistringrsysterratibbletriebeardurltoolsutf8vctrsviridisLitewhiskerwithrwkxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Get species authors from WSC. | authors |
| Create phylogenetic tree. | buildtree |
| Check taxa names in WSC. | checknames |
| Get taxon countries from WSC. | countries |
| Get species distributions from WSC. | distribution |
| Get country endemics from WSC. | endemics |
| Global spider backbone tree. | globalTree |
| Get species LSID from WSC. | lsid |
| Map species ranges. | map |
| Get coordinate data from GBIF and WST. | records |
| Get species from higher taxa. | species |
| Get taxonomy from species. | taxonomy |
| Get trait data from WST. | traits |
| Downloads WSC data. | wsc |
| Matrix matching WSC and ISO3 country codes. | wscmap |