Package: agricolae 1.3-7

Felipe de Mendiburu

agricolae: Statistical Procedures for Agricultural Research

Original idea was presented in the thesis "A statistical analysis tool for agricultural research" to obtain the degree of Master on science, National Engineering University (UNI), Lima-Peru. Some experimental data for the examples come from the CIP and others research. Agricolae offers extensive functionality on experimental design especially for agricultural and plant breeding experiments, which can also be useful for other purposes. It supports planning of lattice, Alpha, Cyclic, Complete Block, Latin Square, Graeco-Latin Squares, augmented block, factorial, split and strip plot designs. There are also various analysis facilities for experimental data, e.g. treatment comparison procedures and several non-parametric tests comparison, biodiversity indexes and consensus cluster.

Authors:Felipe de Mendiburu

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agricolae.pdf |agricolae.html✨
agricolae/json (API)
NEWS

# Install 'agricolae' in R:
install.packages('agricolae', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • CIC - Data for late blight of potatoes
  • Chz2006 - Data amendment Carhuaz 2006
  • ComasOxapampa - Data AUDPC Comas - Oxapampa
  • DC - Data for the analysis of carolina genetic design
  • Glycoalkaloids - Data Glycoalkaloids
  • Hco2006 - Data amendment Huanuco 2006
  • LxT - Data Line by tester
  • RioChillon - Data and analysis Mother and baby trials
  • clay - Data of Ralstonia population in clay soil
  • corn - Data of corn
  • cotton - Data of cotton
  • disease - Data evaluation of the disease overtime
  • frijol - Data of frijol
  • genxenv - Data of potato yield in a different environment
  • grass - Data for Friedman test
  • greenhouse - Data in greenhouse
  • growth - Data growth of trees
  • haynes - Data of AUDPC for nonparametrical stability analysis
  • heterosis - Data of potato, Heterosis
  • huasahuasi - Data: Rainfall thresholds as support for timing fungicide applications in the control of potato late blight in Peru
  • markers - Data of molecular markers
  • melon - Data of yield of melon in a Latin square experiment
  • natives - Data of native potato
  • pamCIP - Data Potato Wild
  • paracsho - Data of Paracsho biodiversity
  • plots - Data for an analysis in split-plot
  • plrv - Data clones from the PLRV population
  • potato - Data of cutting
  • ralstonia - Data of assessment of the population in the soil R.solanacearum
  • rice - Data of Grain yield of rice variety IR8
  • sinRepAmmi - Data for AMMI without repetition
  • soil - Data of soil analysis for 13 localities
  • sweetpotato - Data of sweetpotato yield
  • wilt - Data of Bacterial Wilt (AUDPC) and soil
  • yacon - Data Yacon

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

9.47 score 7 stars 14 packages 2.5k scripts 41k downloads 260 mentions 87 exports 5 dependencies

Last updated 1 years agofrom:06e4e366bf. Checks:OK: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 15 2024
R-4.5-linuxOKNov 15 2024

Exports:AMMIAMMI.contouraudpcaudpsbar.errbar.groupBIB.testcarolinaconsensuscorrelcorrelationcv.modelcv.similarityDAU.testdelete.nadesign.abdesign.alphadesign.bibdesign.crddesign.cyclicdesign.daudesign.graecodesign.latticedesign.lsddesign.matdesign.rcbddesign.splitdesign.stripdesign.youdendiffographduncan.testdurbin.testfriedmangraph.freqhcuthgroupsHSD.testindex.AMMIindex.bioindex.smithinter.freqjoin.freqkendallkruskalkurtosislastClateblightlineXtesterLSD.testMedian.testmontecarlononadditivitynormal.freqogive.freqorder.grouporderPvaluepath.analysisPBIB.testplot.AMMIplot.graph.freqplot.grouppolygon.freqreg.homogREGW.testresampling.cvresampling.modelscheffe.testsimilaritysimulation.modelskewnessSNK.testsp.plotssp.plotstability.nonparstability.parstat.freqstrip.plotsturges.freqsummary.graph.freqtable.freqtapply.statvarkwaerden.testwallerwaller.testweatherSeverityzigzag

Dependencies:AlgDesignclusterlatticeMASSnlme

agricolae tutorial

Rendered fromtutorial.Rnwusingutils::Sweaveon Nov 15 2024.

Last update: 2023-10-22
Started: 2014-06-18

Readme and manuals

Help Manual

Help pageTopics
Statistical Procedures for Agricultural Researchagricolae-package agricolae
AMMI AnalysisAMMI
AMMI contourAMMI.contour
Calculating the absolute or relative value of the AUDPCaudpc
The Area Under the Disease Progress Stairsaudps
Plotting the standard error or standard deviance of a multiple comparison of meansbar.err
Plotting the multiple comparison of meansbar.group
Finding the Variance Analysis of the Balanced Incomplete Block DesignBIB.test
North Carolina Designs I, II and IIIcarolina
Data amendment Carhuaz 2006Chz2006
Data for late blight of potatoesCIC
Data of Ralstonia population in clay soilclay
Data AUDPC Comas - OxapampaComasOxapampa
consensus of clustersconsensus
Data of corncorn
Correlation Coefficientcorrel
Correlation analysis. Methods of Pearson, Spearman, Kendall and Lincorrelation
Data of cottoncotton
Coefficient of the experiment variationcv.model
Coefficient of the similarity matrix variationcv.similarity
Finding the Variance Analysis of the Augmented block DesignDAU.test
Data for the analysis of carolina genetic designDC
Omitting the rows or columns with missing observations of a matrix (NA)delete.na
Design of experiments for a factorialdesign.ab
Alpha design type (0,1)design.alpha
Randomized Balanced Incomplete Block Designs. BIBdesign.bib
Completely Randomized Designdesign.crd
Cyclic designsdesign.cyclic
Augmented block designdesign.dau
Graeco - latin square designdesign.graeco
Lattice designsdesign.lattice
Latin Square Designdesign.lsd
Experimental design matrixdesign.mat
Randomized Complete Block Designdesign.rcbd
Split Plot Designdesign.split
Strip Plot Designdesign.strip
Incomplete Latin Square Designdesign.youden
Plotting the multiple comparison of meansdiffograph
Data evaluation of the disease overtimedisease
Duncan's new multiple range testduncan.test
Durbin test and multiple comparison of treatmentsdurbin.test
Friedman test and multiple comparison of treatmentsfriedman
Data of frijolfrijol
Data of potato yield in a different environmentgenxenv
Data GlycoalkaloidsGlycoalkaloids
Histogramgraph.freq
Data for Friedman testgrass
Data in greenhousegreenhouse
Data growth of treesgrowth
Data of AUDPC for nonparametrical stability analysishaynes
Data amendment Huanuco 2006Hco2006
Cut tree of consensushcut
Data of potato, Heterosisheterosis
groups of hclusthgroups
Multiple comparisons: TukeyHSD.test
Data: Rainfall thresholds as support for timing fungicide applications in the control of potato late blight in Peruhuasahuasi
AMMI index and yield stabilityindex.AMMI
Biodiversity Indexindex.bio
Uniformity soil. Smith's Index of Soil Heterogeneityindex.smith
Class intervalsinter.freq
Join class for histogramjoin.freq
Correlation of Kendallkendall
Kruskal Wallis test and multiple comparison of treatments.kruskal
Finding the Kurtosis coefficientkurtosis
Setting the last character of a chainlastC
LATEBLIGHT - Simulator for potato late blight Version LB2004lateblight
Line x Tester AnalysislineXtester
Multiple comparisons, "Least significant difference" and Adjust P-valuesLSD.test
Data Line by testerLxT
Data of molecular markersmarkers
Median test. Multiple comparisonsMedian.test
Data of yield of melon in a Latin square experimentmelon
Random generation by Montecarlomontecarlo
Data of native potatonatives
Nonadditivity model testnonadditivity
Normal curve on the histogramnormal.freq
Plotting the ogive from a histogramogive.freq
Ordering the treatments according to the multiple comparisonorder.group
Grouping the treatments averages in a comparison with a minimum valueorderPvalue
Data Potato WildpamCIP
Data of Paracsho biodiversityparacsho
Path Analysispath.analysis
Analysis of the Partially Balanced Incomplete Block DesignPBIB.test
PLOT AMMIplot.AMMI
Histogramplot.graph.freq
Plotting the multiple comparison of meansplot.group
Data for an analysis in split-plotplots
Data clones from the PLRV populationplrv
The polygon of frequency on the histogrampolygon.freq
Data of cuttingpotato
Data of assessment of the population in the soil R.solanacearumralstonia
Homologation of regressionsreg.homog
Ryan, Einot and Gabriel and Welsch multiple range testREGW.test
Resampling to find the optimal number of markersresampling.cv
Resampling for linear modelsresampling.model
Data of Grain yield of rice variety IR8rice
Data and analysis Mother and baby trialsRioChillon
Multiple comparisons, scheffescheffe.test
Matrix of similarity in binary datasimilarity
Simulation of the linear model under normalitysimulation.model
Data for AMMI without repetitionsinRepAmmi
Finding the skewness coefficientskewness
Student-Newman-Keuls (SNK)SNK.test
Data of soil analysis for 13 localitiessoil
Splip-Plot analysissp.plot
Split-split-Plot analysisssp.plot
Nonparametric stability analysisstability.nonpar
Stability analysis. SHUKLA'S STABILITY VARIANCE AND KANG'Sstability.par
Descriptive measures of grouped datastat.freq
Strip-Plot analysisstrip.plot
Class intervals for a histogram, the rule of Sturgessturges.freq
frequency Table of a Histogramsummary.graph.freq
Data of sweetpotato yieldsweetpotato
frequency Table of a Histogramtable.freq
Statistics of data grouped by factorstapply.stat
Variance K, ties, Kendallvark
Multiple comparisons. The van der Waerden (Normal Scores)waerden.test
Computations of Bayesian t-values for multiple comparisonswaller
Multiple comparisons, Waller-Duncanwaller.test
Weather and SeverityweatherSeverity
Data of Bacterial Wilt (AUDPC) and soilwilt
Data Yaconyacon
order plot in serpentinezigzag