Package: agricolae 1.3-7

Felipe de Mendiburu

agricolae: Statistical Procedures for Agricultural Research

Original idea was presented in the thesis "A statistical analysis tool for agricultural research" to obtain the degree of Master on science, National Engineering University (UNI), Lima-Peru. Some experimental data for the examples come from the CIP and others research. Agricolae offers extensive functionality on experimental design especially for agricultural and plant breeding experiments, which can also be useful for other purposes. It supports planning of lattice, Alpha, Cyclic, Complete Block, Latin Square, Graeco-Latin Squares, augmented block, factorial, split and strip plot designs. There are also various analysis facilities for experimental data, e.g. treatment comparison procedures and several non-parametric tests comparison, biodiversity indexes and consensus cluster.

Authors:Felipe de Mendiburu

agricolae_1.3-7.tar.gz
agricolae_1.3-7.tar.gz(r-4.7-any)agricolae_1.3-7.tar.gz(r-4.6-any)
agricolae_1.3-7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
agricolae/json (API)

# Install 'agricolae' in R:

install.packages('agricolae', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

Chz2006 - Data amendment Carhuaz 2006
CIC - Data for late blight of potatoes
clay - Data of Ralstonia population in clay soil
ComasOxapampa - Data AUDPC Comas - Oxapampa
corn - Data of corn
cotton - Data of cotton
DC - Data for the analysis of carolina genetic design
disease - Data evaluation of the disease overtime
frijol - Data of frijol
genxenv - Data of potato yield in a different environment
Glycoalkaloids - Data Glycoalkaloids
grass - Data for Friedman test
greenhouse - Data in greenhouse
growth - Data growth of trees
haynes - Data of AUDPC for nonparametrical stability analysis
Hco2006 - Data amendment Huanuco 2006
heterosis - Data of potato, Heterosis
huasahuasi - Data: Rainfall thresholds as support for timing fungicide applications in the control of potato late blight in Peru
LxT - Data Line by tester
markers - Data of molecular markers
melon - Data of yield of melon in a Latin square experiment
natives - Data of native potato
pamCIP - Data Potato Wild
paracsho - Data of Paracsho biodiversity
plots - Data for an analysis in split-plot
plrv - Data clones from the PLRV population
potato - Data of cutting
ralstonia - Data of assessment of the population in the soil R.solanacearum
rice - Data of Grain yield of rice variety IR8
RioChillon - Data and analysis Mother and baby trials
sinRepAmmi - Data for AMMI without repetition
soil - Data of soil analysis for 13 localities
sweetpotato - Data of sweetpotato yield
wilt - Data of Bacterial Wilt (AUDPC) and soil
yacon - Data Yacon

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

10.05 score 9 stars 18 packages 4.5k scripts 52k downloads 260 mentions 87 exports 5 dependencies

Last updated from:06e4e366bf. Checks:4 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	139
source / vignettes	OK	175
linux-release-x86_64	OK	112
wasm-release	OK	96

Exports:AMMI AMMI.contour audpc audps bar.err bar.group BIB.test carolina consensus correl correlation cv.model cv.similarity DAU.test delete.na design.ab design.alpha design.bib design.crd design.cyclic design.dau design.graeco design.lattice design.lsd design.mat design.rcbd design.split design.strip design.youden diffograph duncan.test durbin.test friedman graph.freq hcut hgroups HSD.test index.AMMI index.bio index.smith inter.freq join.freq kendall kruskal kurtosis lastC lateblight lineXtester LSD.test Median.test montecarlo nonadditivity normal.freq ogive.freq order.group orderPvalue path.analysis PBIB.test plot.AMMI plot.graph.freq plot.group polygon.freq reg.homog REGW.test resampling.cv resampling.model scheffe.test similarity simulation.model skewness SNK.test sp.plot ssp.plot stability.nonpar stability.par stat.freq strip.plot sturges.freq summary.graph.freq table.freq tapply.stat vark waerden.test waller waller.test weatherSeverity zigzag

Dependencies:AlgDesign cluster lattice MASS nlme

agricolae tutorial

Rendered fromtutorial.Rnwusingutils::Sweave

Last update: 2023-10-22
Started: 2014-06-18

Help page	Topics
Statistical Procedures for Agricultural Research	agricolae-package agricolae
AMMI Analysis	AMMI
AMMI contour	AMMI.contour
Calculating the absolute or relative value of the AUDPC	audpc
The Area Under the Disease Progress Stairs	audps
Plotting the standard error or standard deviance of a multiple comparison of means	bar.err
Plotting the multiple comparison of means	bar.group
Finding the Variance Analysis of the Balanced Incomplete Block Design	BIB.test
North Carolina Designs I, II and III	carolina
Data amendment Carhuaz 2006	Chz2006
Data for late blight of potatoes	CIC
Data of Ralstonia population in clay soil	clay
Data AUDPC Comas - Oxapampa	ComasOxapampa
consensus of clusters	consensus
Data of corn	corn
Correlation Coefficient	correl
Correlation analysis. Methods of Pearson, Spearman, Kendall and Lin	correlation
Data of cotton	cotton
Coefficient of the experiment variation	cv.model
Coefficient of the similarity matrix variation	cv.similarity
Finding the Variance Analysis of the Augmented block Design	DAU.test
Data for the analysis of carolina genetic design	DC
Omitting the rows or columns with missing observations of a matrix (NA)	delete.na
Design of experiments for a factorial	design.ab
Alpha design type (0,1)	design.alpha
Randomized Balanced Incomplete Block Designs. BIB	design.bib
Completely Randomized Design	design.crd
Cyclic designs	design.cyclic
Augmented block design	design.dau
Graeco - latin square design	design.graeco
Lattice designs	design.lattice
Latin Square Design	design.lsd
Experimental design matrix	design.mat
Randomized Complete Block Design	design.rcbd
Split Plot Design	design.split
Strip Plot Design	design.strip
Incomplete Latin Square Design	design.youden
Plotting the multiple comparison of means	diffograph
Data evaluation of the disease overtime	disease
Duncan's new multiple range test	duncan.test
Durbin test and multiple comparison of treatments	durbin.test
Friedman test and multiple comparison of treatments	friedman
Data of frijol	frijol
Data of potato yield in a different environment	genxenv
Data Glycoalkaloids	Glycoalkaloids
Histogram	graph.freq
Data for Friedman test	grass
Data in greenhouse	greenhouse
Data growth of trees	growth
Data of AUDPC for nonparametrical stability analysis	haynes
Data amendment Huanuco 2006	Hco2006
Cut tree of consensus	hcut
Data of potato, Heterosis	heterosis
groups of hclust	hgroups
Multiple comparisons: Tukey	HSD.test
Data: Rainfall thresholds as support for timing fungicide applications in the control of potato late blight in Peru	huasahuasi
AMMI index and yield stability	index.AMMI
Biodiversity Index	index.bio
Uniformity soil. Smith's Index of Soil Heterogeneity	index.smith
Class intervals	inter.freq
Join class for histogram	join.freq
Correlation of Kendall	kendall
Kruskal Wallis test and multiple comparison of treatments.	kruskal
Finding the Kurtosis coefficient	kurtosis
Setting the last character of a chain	lastC
LATEBLIGHT - Simulator for potato late blight Version LB2004	lateblight
Line x Tester Analysis	lineXtester
Multiple comparisons, "Least significant difference" and Adjust P-values	LSD.test
Data Line by tester	LxT
Data of molecular markers	markers
Median test. Multiple comparisons	Median.test
Data of yield of melon in a Latin square experiment	melon
Random generation by Montecarlo	montecarlo
Data of native potato	natives
Nonadditivity model test	nonadditivity
Normal curve on the histogram	normal.freq
Plotting the ogive from a histogram	ogive.freq
Ordering the treatments according to the multiple comparison	order.group
Grouping the treatments averages in a comparison with a minimum value	orderPvalue
Data Potato Wild	pamCIP
Data of Paracsho biodiversity	paracsho
Path Analysis	path.analysis
Analysis of the Partially Balanced Incomplete Block Design	PBIB.test
PLOT AMMI	plot.AMMI
Histogram	plot.graph.freq
Plotting the multiple comparison of means	plot.group
Data for an analysis in split-plot	plots
Data clones from the PLRV population	plrv
The polygon of frequency on the histogram	polygon.freq
Data of cutting	potato
Data of assessment of the population in the soil R.solanacearum	ralstonia
Homologation of regressions	reg.homog
Ryan, Einot and Gabriel and Welsch multiple range test	REGW.test
Resampling to find the optimal number of markers	resampling.cv
Resampling for linear models	resampling.model
Data of Grain yield of rice variety IR8	rice
Data and analysis Mother and baby trials	RioChillon
Multiple comparisons, scheffe	scheffe.test
Matrix of similarity in binary data	similarity
Simulation of the linear model under normality	simulation.model
Data for AMMI without repetition	sinRepAmmi
Finding the skewness coefficient	skewness
Student-Newman-Keuls (SNK)	SNK.test
Data of soil analysis for 13 localities	soil
Splip-Plot analysis	sp.plot
Split-split-Plot analysis	ssp.plot
Nonparametric stability analysis	stability.nonpar
Stability analysis. SHUKLA'S STABILITY VARIANCE AND KANG'S	stability.par
Descriptive measures of grouped data	stat.freq
Strip-Plot analysis	strip.plot
Class intervals for a histogram, the rule of Sturges	sturges.freq
frequency Table of a Histogram	summary.graph.freq
Data of sweetpotato yield	sweetpotato
frequency Table of a Histogram	table.freq
Statistics of data grouped by factors	tapply.stat
Variance K, ties, Kendall	vark
Multiple comparisons. The van der Waerden (Normal Scores)	waerden.test
Computations of Bayesian t-values for multiple comparisons	waller
Multiple comparisons, Waller-Duncan	waller.test
Weather and Severity	weatherSeverity
Data of Bacterial Wilt (AUDPC) and soil	wilt
Data Yacon	yacon
order plot in serpentine	zigzag

Package: agricolae 1.3-7

agricolae: Statistical Procedures for Agricultural Research

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Help Manual

Usage by other packages (reverse dependencies)