Package: admix 2.3.3
admix: Package Admix for Admixture (aka Contamination) Models
Implements techniques to estimate the unknown quantities related to two-component admixture models, where the two components can belong to any distribution (note that in the case of multinomial mixtures, the two components must belong to the same family). Estimation methods depend on the assumptions made on the unknown component density; see Bordes and Vandekerkhove (2010) <doi:10.3103/S1066530710010023>, Patra and Sen (2016) <doi:10.1111/rssb.12148>, and Milhaud, Pommeret, Salhi, Vandekerkhove (2024) <doi:10.3150/23-BEJ1593>. In practice, one can estimate both the mixture weight and the unknown component density in a wide variety of frameworks. On top of that, hypothesis tests can be performed in one and two-sample contexts to test the unknown component density (see Milhaud, Pommeret, Salhi and Vandekerkhove (2022) <doi:10.1016/j.jspi.2021.05.010>, and Milhaud, Pommeret, Salhi, Vandekerkhove (2024) <doi:10.3150/23-BEJ1593>). Finally, clustering of unknown mixture components is also feasible in a K-sample setting (see Milhaud, Pommeret, Salhi, Vandekerkhove (2024) <https://jmlr.org/papers/v25/23-0914.html>).
Authors:
admix_2.3.3.tar.gz
admix_2.3.3.tar.gz(r-4.5-noble)admix_2.3.3.tar.gz(r-4.4-noble)
admix_2.3.3.tgz(r-4.4-emscripten)admix_2.3.3.tgz(r-4.3-emscripten)
admix.pdf |admix.html✨
admix/json (API)
# Install 'admix' in R: |
install.packages('admix', repos = c('https://cran.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/xaviermilhaud/admix-rpackage/issues
- allGalaxies - Measurements of heliocentric velocities in four galaxies
- milkyWay - Heliocentric velocity for the Milky Way
- mortality_sample - Deaths statistics in 11 european countries
- stmf_small - Short-term Mortality Fluctuations (STMF) data
Last updated 24 days agofrom:b4c816f55c. Checks:OK: 2. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 11 2024 |
R-4.5-linux-x86_64 | OK | Nov 11 2024 |
Exports:admix_clusteradmix_estimadmix_modeladmix_testdecontaminated_cdfdecontaminated_densityestim_BVdkestim_IBMestim_PSgaussianity_testgetmixingWeightgetmixtDataIBM_k_samples_testIBM_tabul_stochasticIntegorthobasis_testtwoComp_mixt
Dependencies:clicolorspacecubatureEnvStatsfansifarverfdrtoolggplot2gluegtableIsoisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmenortestorthopolynompillarpkgconfigpolynompracmaR6rbibutilsRColorBrewerRcppRdpackrlangscalestibbleutf8vctrsviridisLitewithr
Clustering of unknown subpopulations in admixture models
Rendered fromadmixture-clustering.Rmd
usingknitr::rmarkdown
on Nov 11 2024.Last update: 2024-11-08
Started: 2021-06-14
Estimation of unknown elements in admixture models
Rendered fromadmixture-weight-estimation.Rmd
usingknitr::rmarkdown
on Nov 11 2024.Last update: 2024-11-05
Started: 2021-06-14
Hypothesis test in admixture models
Rendered fromtest-hypothesis.Rmd
usingknitr::rmarkdown
on Nov 11 2024.Last update: 2024-11-05
Started: 2021-06-14